BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC06FM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig331 1534 0.0
>3x_Contig331
Length = 1863
Score = 1534 bits (774), Expect = 0.0
Identities = 800/805 (99%), Gaps = 3/805 (0%)
Strand = Plus / Plus
Query: 86 attaattagcggtggacaagatggatgcataaagatttgggatttgagatctcctaaaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 attaattagcggtggacaagatggatgcataaagatttgggatttgagatctcctaaaat 868
Query: 146 ctccaccactaggagtgatgtaagtatcaacaccgggtctgattccattagagacgtaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 ctccaccactaggagtgatgtaagtatcaacaccgggtctgattccattagagacgtaaa 928
Query: 206 atggatgccttcttacgagttttctaatgataccaatggtctttcaaacagacatttcaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 atggatgccttcttacgagttttctaatgataccaatggtctttcaaacagacatttcaa 988
Query: 266 atttgccagtgtgcatgactctggattattattgaagtttgatttgagacaaccaaacca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 atttgccagtgtgcatgactctggattattattgaagtttgatttgagacaaccaaacca 1048
Query: 326 agctgaaaaaaagattaatgcacattctggtcccgccttatgtttgaattggcatccgca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 agctgaaaaaaagattaatgcacattctggtcccgccttatgtttgaattggcatccgca 1108
Query: 386 tcaggactacattattagtggtggaagagacggaaaatgttgcttgtggtatgtaggcga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 tcaggactacattattagtggtggaagagacggaaaatgttgcttgtggtatgtaggcga 1168
Query: 446 caaatctaatcaagttggtaacattagtagtaccaacctcaattcaagtaatccagcaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 caaatctaatcaagttggtaacattagtagtaccaacctcaattcaagtaatccagcaac 1228
Query: 506 gcataatttatcatcatcataccccttggggctatccaacacccttgcatttcctgagct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 gcataatttatcatcatcataccccttggggctatccaacacccttgcatttcctgagct 1288
Query: 566 cacaataaataccgctcgttccatgaataaacttaagtttcgtccaaaatatgagacgaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 cacaataaataccgctcgttccatgaataaacttaagtttcgtccaaaatatgagacgaa 1348
Query: 626 tgtattcaattcattgattgggacttcatccatgggcgaagattcggatgtatctgttta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 tgtattcaattcattgattgggacttcatccatgggcgaagattcggatgtatctgttta 1408
Query: 686 ttcgctagcaagaaaatatattcctaaaaacgttattgcttccagtgcaccttctgttgg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 ttcgctagcaagaaaatatattcctaaaaacgttattgcttccagtgcaccttctgttgg 1468
Query: 746 ttttgtctggtgggatgacgacacgatattc-atatagacaagc-aaataccgttactgg 803
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 1469 ttttgtctggtgggatgacgacacgatattcaatatagacaagcaaaataccgttactgg 1528
Query: 804 gtgggatatctctcatgaaccgactgtacttgataatttgccgganaacacaat-aaatg 862
||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct: 1529 gtgggatatctctcatgaaccgactgtacttgataatttgccgaaaaacacaataaaatg 1588
Query: 863 gagagatttggatggcgatggtatt 887
|||||||||||||||||||||||||
Sbjct: 1589 gagagatttggatggcgatggtatt 1613
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6000
Number of Sequences: 1807
Number of extensions: 6000
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)