BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC06RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1636 1439 0.0
>3x_Contig1636
Length = 15667
Score = 1439 bits (726), Expect = 0.0
Identities = 758/766 (98%), Gaps = 2/766 (0%)
Strand = Plus / Plus
Query: 86 cgctttgtaggggtacatcgtaaacaattcattttgttagagtcgcttgtgagaggatat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14500 cgctttgtaggggtacatcgtaaacaattcattttgttagagtcgcttgtgagaggatat 14559
Query: 146 tattatgcattatgcgtagatacctcgattgcaatacagatatcattggataatctaaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14560 tattatgcattatgcgtagatacctcgattgcaatacagatatcattggataatctaaac 14619
Query: 206 aaggtagctcctgccggttgtttactttaagttccattatgagggaataggatgattcga 265
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 14620 aaggtagctcctgccggttgcttactttaagttccattatgagggaataggatgattcga 14679
Query: 266 agcaagtattagtcttgaaatttatttataaagggcgtctgtcagaaggatggttctact 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14680 agcaagtattagtcttgaaatttatttataaagggcgtctgtcagaaggatggttctact 14739
Query: 326 tattcgttgtttgttaactcacatatttctctattacatctttgcatccactcagcaaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14740 tattcgttgtttgttaactcacatatttctctattacatctttgcatccactcagcaaac 14799
Query: 386 aaaaactcaaacctcaaacaagttttattataatacaaagatatactcatgactgtcgaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14800 aaaaactcaaacctcaaacaagttttattataatacaaagatatactcatgactgtcgaa 14859
Query: 446 aacgaaaataactcttacgtcttccaaggatacatcactaaaaagttacctcatgtcaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14860 aacgaaaataactcttacgtcttccaaggatacatcactaaaaagttacctcatgtcaaa 14919
Query: 506 cgcggtgaaggatgcagaattgtcgttgaaaaagatggcaagttacatgaagatgtcttc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14920 cgcggtgaaggatgcagaattgtcgttgaaaaagatggcaagttacatgaagatgtcttc 14979
Query: 566 gatggcatcactggtgctgctgtcggggcattgggatggggtgatgaggatatccatggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14980 gatggcatcactggtgctgctgtcggggcattgggatggggtgatgaggatatccatggg 15039
Query: 626 atcatgacagaagcagccaagaatcacacttacactttcccatctttaatcggtaattca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15040 atcatgacagaagcagccaagaatcacacttacactttcccatctttaatcggtaattca 15099
Query: 686 cattctgaagaattggctaagttctacattgaaaactctccaaa-ggcgcctttgaatcc 744
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 15100 caatctgaagaattggctaagttctacattgaaaactctccaaagggcgcctttgaatcc 15159
Query: 745 gctttgtggtgttgctctgtttctggagctaaccaaaatgctatgaaaatcattagacaa 804
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 15160 gctttgtggtgttgctctggttctgaagctaacgaaaatgctatgaaaatcattagacaa 15219
Query: 805 taccaattggagcgtggcccacccaaaaagaactaagatcatctct 850
||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 15220 taccaattggagcgtgg-ccaaccaaaaagaactaagatcatctct 15264
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6778
Number of Sequences: 1807
Number of extensions: 6778
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)