BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC07FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1693 1370 0.0
>3x_Contig1693
Length = 15531
Score = 1370 bits (691), Expect = 0.0
Identities = 770/791 (97%), Gaps = 4/791 (0%)
Strand = Plus / Plus
Query: 88 ttatatgggatcctaatggaatccatctcagggacagtatgaaggaaatcaaatgcaatg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 ttatatgggatcctaatggaatccatctcagggacagtatgaaggaaatcaaatgcaatg 137
Query: 148 aagtggatttcacagttttcaagtccttgacctcagatgatttgtctaccttcaattatc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aagtggatttcacagttttcaagtccttgacctcagatgatttgtctaccttcaattatc 197
Query: 208 aatacgaatcttccataatttggtccaaacttataattgatggattattcatgcttttca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aatacgaatcttccataatttggtccaaacttataattgatggattattcatgcttttca 257
Query: 268 cgggaaatttatacaaaccatggtatcatcttgagttggctccaattgaacatccggatt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cgggaaatttatacaaaccatggtatcatcttgagttggctccaattgaacatccggatt 317
Query: 328 ttgttcaatatttctccgaaagaacccacgatatataccagcgtttaaaagcgatagtgg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttgttcaatatttctccgaaagaacccacgatatataccagcgtttaaaagcgatagtgg 377
Query: 388 aactatttcctactcaggattccatttatcaaaatgccaatattttgatagaccttcggt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aactatttcctactcaggattccatttatcaaaatgccaatattttgatagaccttcggt 437
Query: 448 tggactacttcaatgacacggactttatacggcaactatcacagcattggttcgagaaac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tggactacttcaatgacacggactttatacggcaactatcacagcattggttcgagaaac 497
Query: 508 ctgtcatacccagttatatagaccttagtttcttattttaaacgagatatacgtttaaaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctgtcatacccagttatatagaccttagtttcttattttaaacgagatatacgtttaaaa 557
Query: 568 caggtttctacttaaatatacatagtttaattaactctccg-aagtatacatcctaatta 626
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 558 caggtttctacttaaatatacatagtttaattaactctccgaaagtatacatctaaatta 617
Query: 627 tgagccaaacaactgacccaataattgttataccaattacagcggtgatgataccagcac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgagccaaacaactgacccaataattgttataccaattacagcggtgatgataccagcac 677
Query: 687 cggcttggtcacctttaccgattgttaagggtgccaaaatagttgggagattgttcggta 746
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 678 cggcttggtcacctttaccgattgttaagggtgccaaattagtt-ggagattgttcggta 736
Query: 747 cctgcagcttggttaccagccggaataccaacgtcgtcagctgtgtatggagcaagcctg 806
||||||||| |||||||||||| | ||||| ||||||||||||||||||||||| |||||
Sbjct: 737 cctgcagctgggttaccagccgaagtaccaccgtcgtcagctgtgtatggagcaggcctg 796
Query: 807 ttc-aacatttttagttttgcataaactttaatgcagccatttgttcaacttaaaccatt 865
| | ||||| || ||||||||||| | |||||||||||||||||| || ||||||||
Sbjct: 797 tccaaacatcttaggttttgcataacttctaatgcagccatttgttc-acctaaaccata 855
Query: 866 tttaccgtccc 876
|||||||||||
Sbjct: 856 tttaccgtccc 866
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5860
Number of Sequences: 1807
Number of extensions: 5860
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)