BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC07RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig721 1124 0.0
>3x_Contig721
Length = 1977
Score = 1124 bits (567), Expect = 0.0
Identities = 625/643 (97%), Gaps = 1/643 (0%)
Strand = Plus / Minus
Query: 49 ggctaaattgtcctcggcttttctggacgccatattgagtttatccatcatctccaattc 108
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1775 ggctaaattgttctcggctagtctggacgccatattgagtttatccatcatctccaattc 1716
Query: 109 agaatcaaggtccgcatctgtctcatcccctccgtgttttctcaatctgtgggccttcgg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1715 agaatcaaggtccgcatctgtctcatcccctccgtgttttctcaatctgtgggccttcgg 1656
Query: 169 cctcccgttttcattactcatttgtgcttcgagagatttcttgttcacttttcgtttgat 228
|||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct: 1655 cctcccgttttcattactcatttgtgcttcgagagatttcttgttcacagtacgacggat 1596
Query: 229 ataaccataaatatacagttcttctcgcacgtcaaaccccaggttcgtaatttggaacag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1595 ataaccataaatatacagttcttctcgcacgtcaaaccccaggttcgtaatttggaacag 1536
Query: 289 taaattgatcaattttgcgaattcagaagttttaaggtccgtagtcagacctgctgctgg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1535 taaattgatcaattttgcgaattcagaagttttaaggtccgtagtcagacctgctgctgg 1476
Query: 349 ctttttttatgcagataaagctcaaagcatgtggttcctttgtacaatcttgatattctt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1475 ctttttttatgcagataaagctcaaagcatgtggttcctttgtacaatcttgatattctt 1416
Query: 409 gttcctcgaattgtcttacttttcagcattttggaacatgaaaaaggaactgaaattcaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 gttcctcgaattgtcttacttttcagcattttggaacatgaaaaaggaactgaaattcaa 1356
Query: 469 ataataaattccaagtcactgggtgatatgtaaaggtaatttgggacatccagaaatttg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 ataataaattccaagtcactgggtgatatgtaaaggtaatttgggacatccagaaatttg 1296
Query: 529 aaaggagtaaagctggagcctgtgattgataaattcatttgcttacagagttgattcaca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 aaaggagtaaagctggagcctgtgattgataaattcatttgcttacagagttgattcaca 1236
Query: 589 gtcacttcaaacctgtaactgctgtttgggtctcttctacactggtgagaactattatat 648
|||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| ||||
Sbjct: 1235 gtcacttcaaacctgtaactgctgttcgggtttcttctagactggtgagaactatcatat 1176
Query: 649 gataattttaggttttgttctttcacactttggattcaaaaat 691
|||| ||||||||||||||| |||||||||| || |||||||
Sbjct: 1175 cataa-tttaggttttgttctctcacactttgaatacaaaaat 1134
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9279
Number of Sequences: 1807
Number of extensions: 9279
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)