BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC08RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig802 1197 0.0
>3x_Contig802
Length = 2309
Score = 1197 bits (604), Expect = 0.0
Identities = 631/639 (98%), Gaps = 1/639 (0%)
Strand = Plus / Plus
Query: 49 gcagcgtaagaattctcctcactatgaccggcagaagcaaatagcttactcaattaaaag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 gcagcgtaagaattctcctcactatgaccggcagaagcaaatagcttactcaattaaaag 1730
Query: 109 aaacatacctacatcattgttgactgaattagctgctgacgtttcggatagtactgtgga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1731 aaacatacctacatcattgttgactgaattagctgctgacgtttcggatagtactgtgga 1790
Query: 169 ctggtactttttaagggaagatcctgattttagcgtggtaccaagctttttttcaacgtt 228
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 1791 ctggtactttttaagggaagatcctgattttagcgtggtaccaagcagatactcaacgtt 1850
Query: 229 tttgggaaaaaggttaagcattcctctagatgatctttacaagaaattcggagctgatct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1851 tttgggaaaaaggttaagcattcctctagatgatctttacaagaaattcggagctgatct 1910
Query: 289 tcgcgcaaatatagagtatacaaactgtccttatggtaaattaattccggtagaaactat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1911 tcgcgcaaatatagagtatacaaactgtccttatggtaaattaattccggtagaaactat 1970
Query: 349 gtgcggccttatcgaatctaataattcggatagcgttcaagcatttaagcattttatcaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1971 gtgcggccttatcgaatctaataattcggatagcgttcaagcatttaagcattttatcaa 2030
Query: 409 attcattcttgatagaaaaatatcgggtaatttaaagacaaaatgggttataaatatgtg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2031 attcattcttgatagaaaaatatcgggtaatttaaagacaaaatgggttataaatatgtg 2090
Query: 469 gaatcgtttcacttgtgataaattgtcggtatatttcgaagttactccacgaaattttta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2091 gaatcgtttcacttgtgataaattgtcggtatatttcgaagttactccacgaaattttta 2150
Query: 529 tctaatgcattacaggttaactagattaatacccattgaaagtgaaattgtttctaaact 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2151 tctaatgcattacaggttaactagattaatacccattgaaagtgaaattgtttctaaact 2210
Query: 589 atttccaaacgacaatgatgtaatcactgagttcgaaaa-ttactagattctcaggaatg 647
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2211 atttccaaacgacaatgatgtaatcactgagttcgaaaatttactagattctcaggaatg 2270
Query: 648 gacgtctttattgtattttattatacttgttttaggaac 686
||||||| ||||| |||||||||||||||||||||||||
Sbjct: 2271 gacgtctntattggattttattatacttgttttaggaac 2309
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6450
Number of Sequences: 1807
Number of extensions: 6450
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)