BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC09FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1228 938 0.0
3x_Contig1177 172 8e-43
>3x_Contig1228
Length = 5992
Score = 938 bits (473), Expect = 0.0
Identities = 503/513 (98%)
Strand = Plus / Minus
Query: 88 tacttctcgtcgttttgatccaatggagagagttgagatatatactgtaaggggattctt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tacttctcgtcgttttgatccaatggagagagttgagatatatactgtaaggggattctt 454
Query: 148 tgtaaaataattttagtttgcgttaaagataacaaaggagtttccgggtatttctcagcg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgtaaaataattttagtttgcgttaaagataacaaaggagtttccgggtatttctcagcg 394
Query: 208 ccaagtctatacctttccaaagcagcatcgaaaaattcattcattctctcgtacttcttc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccaagtctatacctttccaaagcagcatcgaaaaattcattcattctctcgtacttcttc 334
Query: 268 tcttcgtcatcggtttcttccggaaggaaaactgttagctctgccaaagcctgcgcataa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tcttcgtcatcggtttcttccggaaggaaaactgttagctctgccaaagcctgcgcataa 274
Query: 328 atagagtgaaacaaatcgctcagttttatagtgctatcattgtcctgaagacgcaataat 387
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atagagtgaacaaaatcgctcagttttatagtgctatcattgtcctgaagacgcaataat 214
Query: 388 ctgtcacattcgtgcactacaccatttaacaatagctgattatctttatccttcaggaaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ctgtcacattcgtgcactacaccatttaacaatagctgattatctttatccttcaggaaa 154
Query: 448 gtttcccacaaaccctttagttggactaactcatcatcggcatcctcgttttcatccaat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gtttcccacaaaccctttagttggactaactcatcatcggcatcctcgttttcatccaat 94
Query: 508 gcaatttcaatctggtttgctgcagatggtgctggtaccgttccctcagaagattgctct 567
| |||| |||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 93 gaaattcaaatctggtttcctgaagatggtgctggtaccgttccctcaaaagattgctct 34
Query: 568 tctggcacagcaactttttgcttcttttgtttc 600
|||||||||| | ||||||||||||||||||||
Sbjct: 33 tctggcacagaacctttttgcttcttttgtttc 1
>3x_Contig1177
Length = 4667
Score = 172 bits (87), Expect = 8e-43
Identities = 132/143 (92%), Gaps = 3/143 (2%)
Strand = Plus / Plus
Query: 756 ataactgcatgtatctctaatctcatctcgtaaaatgtgtcgttaaataaaat-gaacca 814
|||||||||||||||||||||||||||||| |||| ||| ||| |||||||| ||||||
Sbjct: 4 ataactgcatgtatctctaatctcatctcggaaaaagtggcgtgtaataaaattgaacca 63
Query: 815 tgccacgctcaaatctgatgcttactggcacgggctgtcagctgatttcatactgtnatt 874
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct: 64 tgccacgctcaaatctgatgcttactggcacggcctgtcagctgattccatactgt-att 122
Query: 875 cgtgaaaaggcgaattgaaaaag 897
|||| |||||||| |||||||||
Sbjct: 123 cgtg-aaaggcgatttgaaaaag 144
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6418
Number of Sequences: 1807
Number of extensions: 6418
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 2
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)