BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC09RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1673 1479 0.0
>3x_Contig1673
Length = 13723
Score = 1479 bits (746), Expect = 0.0
Identities = 826/846 (97%), Gaps = 5/846 (0%)
Strand = Plus / Minus
Query: 49 ttgacaagttctaagattttgggacaaggaaggcaaactaagaggcaagggattgaagaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8118 ttgacaagttctaagattttgggacaaggaaggcaaactaagaggcaagggattgaagaa 8059
Query: 109 gccctcaaattagaaagaaatggacgtggtgatgaaactaccagggaaattctttacgat 168
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8058 gccctcaaataagaaagaaatggacgtggtgatgaaactaccatttaaattctttacgat 7999
Query: 169 gaaactgaggtaagggattggtatcaagatcatccagaaactaggcccattctggaaagc 228
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 7998 gaaactgaggtaagggattggtatcaagatcatccagaaactaggcccagtcaggaaagc 7939
Query: 229 acagctgaaaattgcaattcggatagtgatgaaacggaccataccagttcagatcaccct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7938 acagctgaaaattgcaattcggatagtgatgaaacggaccataccagttcagatcaccct 7879
Query: 289 atttcggcaaatactgggggatttattgataatagacccagtaaatttggtgggtcaggt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7878 atttcggcaaatactgggggatttattgataatagacccagtaaatttggtgggtcaggt 7819
Query: 349 tttggttttggattcggtaatgcaaaggtggtgaataaaagggcctcgaagaaaaggtat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7818 tttggttttggattcggtaatgcaaaggtggtgaataaaagggcctcgaagaaaaggtat 7759
Query: 409 aactggaagcaaaaggtagagcaagaagaacgtagaaggcgtaaactggatgatgatcag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7758 aactggaagcaaaaggtagagcaagaagaacgtagaaggcgtaaactggatgatgatcag 7699
Query: 469 gattttgaatctgacgaaagtgaatcagaagaacattcatccactgcagaaagtgaacct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7698 gattttgaatctgacgaaagtgaatcagaagaacattcatccactgcagaaagtgaacct 7639
Query: 529 gatgagagtgaatctaatagtaatgctgatagtcacagcgatgatgagtcgagtgagtct 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7638 gatgagagtgaatctaatagtaatgctgatagtcacagcgatgatgagtcgagtgagtct 7579
Query: 589 gacggcgaggaaagatcggattcagaaatagcgcagtgcagaaaacgt-agttcttcagt 647
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 7578 gacggcgaggaaagatcggattcagaaatagcgcagtgcag-aaacgtaagttcttcagt 7520
Query: 648 tgcccaagaatttaaagagtgggcaaatcaggaaattaaaaagcttgaaggtagagatgt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7519 tgcccaagaatttaaagagtgggcaaatcaggaaattaaaaagcttgaaggtagagatgt 7460
Query: 708 agaaatggttatgccttcctcc-acatcaaggtcgataggaccgagagacctggagactt 766
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 7459 agaaatggttatgccttcctccaacatcaaggtcgataggaccgagagacctgaagactt 7400
Query: 767 ttgagatggacttaaagcagatgaatttattgtgaacg-aaattcaacacgtaaagcttt 825
| ||||||||| |||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct: 7399 tgaagatggactcaaagcagatgaatttaatgtgaacgaaaattcaacacgtaaggcttt 7340
Query: 826 ttatgtcaagttaccgagatctgatgctgttcaagctgtgagaaacgcactaacctgttt 885
|||||||||| ||| ||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 7339 ttatgtcaaggtacggagatctgatgctgttcaagctgtgagaagcgcact-acctgttt 7281
Query: 886 tcgccg 891
||||||
Sbjct: 7280 tcgccg 7275
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6183
Number of Sequences: 1807
Number of extensions: 6183
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)