BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC10RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1632 1191 0.0
>3x_Contig1632
Length = 13927
Score = 1191 bits (601), Expect = 0.0
Identities = 692/716 (96%), Gaps = 5/716 (0%)
Strand = Plus / Plus
Query: 48 ctttgttgaacttgttgaacatttctccattcacctacggtttgaccgtcgttcaagttt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565 ctttgttgaacttgttgaacatttctccattcacctacggtttgaccgtcgttcaagttt 1624
Query: 108 acgacaacggtcaagtcttcccagcttccatcttggatatcactgacgatgaattgatct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1625 acgacaacggtcaagtcttcccagcttccatcttggatatcactgacgatgaattgatct 1684
Query: 168 ctcacttcatctctgctgtcaacaccattgcttgtgtttccttggctgctggttacccaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1685 ctcacttcatctctgctgtcaacaccattgcttgtgtttccttggctgctggttacccaa 1744
Query: 228 ccttgccatctgtcggtcactctttgatcaacaactacaaggacttgttggctgtcgcta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1745 ccttgccatctgtcggtcactctttgatcaacaactacaaggacttgttggctgtcgcta 1804
Query: 288 tcgctgctgactacatctacccagaaattgaagaattgaaggacagaattgagaacccag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1805 tcgctgctgactacatctacccagaaattgaagaattgaaggacagaattgagaacccag 1864
Query: 348 atgcttacgcttctgctgccccagttgctgctgcttccggctcttccgaagctgctgctg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1865 atgcttacgcttctgctgccccagttgctgctgcttccggctcttccgaagctgctgctg 1924
Query: 408 aagaagctccagctgaagaagaagaagaatctgatgacgacatgggtttcggtttgttcg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1925 aagaagctccagctgaagaagaagaagaatctgatgacgacatgggtttcggtttgttcg 1984
Query: 468 attaaacaccttataattatggaaacaataacaattaaattttaaattcacatatcggtt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1985 attaaacaccttataattatggaaacaataacaattaaattttaaattcacatatcggtt 2044
Query: 528 tcagatgatcaatctgtatctataagtttagttagtctttattaa-ttctatcttaagcg 586
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2045 tcagatgatcaatctgtatctataagtttagttagtctttattaatttctatcttaagcg 2104
Query: 587 cacaaatcttatcgcatc-aattatcgtgtcttcattgcgaccntttattttgttttttg 645
|||||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||||
Sbjct: 2105 cacaaatcttatcgcatcaaattatcgtgtcttcatggcgacaattta-tttgttttttg 2163
Query: 646 cctggcctaaacggtccgctccattattgtgtagggcaaaatattgcttatatttgaaaa 705
||| | |||| ||||||||||||| | ||||||| || | ||||||| ||||||||| |
Sbjct: 2164 cct-gtctaagcggtccgctccatagtagtgtaggtcagattattgctaatatttgaaga 2222
Query: 706 aaaactgacgtgggacacaacctaaattaccgtttattacca-tttggtcaaagtt 760
||||||||||| |||||||| ||| ||||||||| | || || |||||||||||||
Sbjct: 2223 aaaactgacgtcggacacaaactagattaccgttcactaacagtttggtcaaagtt 2278
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,474
Number of Sequences: 1807
Number of extensions: 10474
Number of successful extensions: 356
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)