BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC11FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1593 1150 0.0
>3x_Contig1593
Length = 10902
Score = 1150 bits (580), Expect = 0.0
Identities = 684/708 (96%), Gaps = 8/708 (1%)
Strand = Plus / Minus
Query: 91 taaatcaagaaacgttattactgtctacaggtacatcagcctgagttgatgcagactgga 150
||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct: 3672 taaatcaagaaacgttattactgtctacaggtacatc-gcctcagttgatgcaaactgga 3614
Query: 151 gagtttccacttcataagacaagtactaggtcaagcgctcatacctcttcgagcagtata 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3613 gagtttccacttcataagacaagtactaggtcaagcgctcatacctcttcgagcagtata 3554
Query: 211 ggaacccggaattttt-tagatccaactctaatgcattacctcagttcccaacgactgac 269
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3553 ggaacccggaataaaagtagatccaactctaatgcaatacctcagttcccaacgactgac 3494
Query: 270 aacttggttggatcgaatagtggtttaaacgtcagcgtggggctatctaaaaagactagt 329
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3493 aactcggttggatcgaatagtggtttaaacgtcagcgtggggctatctaaaaagactagt 3434
Query: 330 aacatgtcaaatacaaacagtgccagtatctataacaatgcgaataccacggaggtatca 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3433 aacatgtcaaatacaaacagtgccagtatctataacaatgcgaataccacggaggtatca 3374
Query: 390 gataaacgctttttggatttgaagaagttgattgtggggcaaaatggaaacgaggttggg 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3373 gataaacgctttttggatttgaagaagttgattgtggggcaaaatggaaacgaggttggg 3314
Query: 450 tccaactcatcagatatatcaaccccatctttaagttctcctttggaattgactaatagt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3313 tccaactcatcagatatatcaaccccatctttaagttctcctttggaattgactaatagt 3254
Query: 510 ccccagtatgaagagatcttgtataacgctccaatggcatcagggtcatcgaatttggct 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3253 ccccagtatgaagagatcttgtataacgctccaatggcatcagggtcatcgaatttggct 3194
Query: 570 atcacaggaagcagaagcaggtctaactccaacattaataccatccaaaactttgtctca 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3193 atcacaggaagcagaagcaggtctaactccaacattaataccatccaaaactttttctca 3134
Query: 630 aggaatagcaaagctcctcgaagttcatttgacgaatcttcagataatcgatccttcacg 689
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3133 gggaatagcaaagctcctcgaagttcatttgacgaatcttcagataatcgatccttcacg 3074
Query: 690 tcttctgagattaatgtat-taaaagggttccttttacttaagagagctttaagttgctt 748
||||||||||||||||||| ||| |||||||| | |||||| |||||||| ||| |||||
Sbjct: 3073 tcttctgagattaatgtatctaagagggttcc-tctacttaggagagcttcaag-tgctt 3016
Query: 749 tgctgcaggaaacgctctctttagacaaagtgccgaagaattcacctg 796
||||| ||||||||||| | || |||||||||||| ||||||||||||
Sbjct: 3015 tgctg-aggaaacgctc-ccttcgacaaagtgccg-agaattcacctg 2971
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5604
Number of Sequences: 1807
Number of extensions: 5604
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)