BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC12FM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig774 1088 0.0
3x_Contig1253 355 1e-97
>3x_Contig774
Length = 2612
Score = 1088 bits (549), Expect = 0.0
Identities = 565/569 (99%), Gaps = 1/569 (0%)
Strand = Plus / Plus
Query: 85 tgatcctcaacttagaataacagtcgatgatgctctacaacatccgtatttgtccatctg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2032 tgatcctcaacttagaataacagtcgatgatgctctacaacatccgtatttgtccatctg 2091
Query: 145 gcatgatcctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaagtgt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2092 gcatgatcctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaagtgt 2151
Query: 205 caatgagattgattat-ttaaacaaatggtaattgacgaagtgaccgatttcaggcaata 263
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2152 caatgagattgaacaacttaaacaaatggtaattgacgaagtgaccgatttcaggcaata 2211
Query: 264 tgtgagattacccctcttacacgagcaacagcaacaacaggggaagacagacggtggttt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 tgtgagattacccctcttacacgagcaacagcaacaacaggggaagacagacggtggttt 2271
Query: 324 tgatgatcaaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagtgaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 tgatgatcaaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagtgaa 2331
Query: 384 caatggtagaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaatgat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2332 caatggtagaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaatgat 2391
Query: 444 gggttccgcgtcacaacaagatcctcttgttggtattcattcggataatttaccaagcca 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2392 gggttccgcgtcacaacaagatcctcttgttggtattcattcggataatttaccaagcca 2451
Query: 504 tgaacttgacttccctcctaggcctagtgagaatgtgctagattcgccaatgggtctaag 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2452 tgaacttgacttccctcctaggcctagtgagaatgtgctagattcgccaatgggtctaag 2511
Query: 564 tcatcagcaaacgcataacggctctcctgagtgccaagatataaatgaccttttaggatt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2512 tcatcagcaaacgcataacggctctcctgagtgccaagatataaatgaccttttaggatt 2571
Query: 624 agaaagagaactagaatttggattagata 652
|||||||||||||||||||||||||||||
Sbjct: 2572 agaaagagaactagaatttggattagata 2600
>3x_Contig1253
Length = 5628
Score = 355 bits (179), Expect = 1e-97
Identities = 219/227 (96%), Gaps = 4/227 (1%)
Strand = Plus / Plus
Query: 672 tctggtatatagcttcatccactctctttgtagaacataaattgttgctcagattctgct 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tctggtatatagcttcatccactctctttgtagaacataaattgttgctcagattctgct 76
Query: 732 atacgtgaaatgcctttgtacaaatttacacatcaaataacaatcattaaactggcagct 791
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 77 atacgtgaaatgcctttgtacaaatttacacatcaaataacaatcataaaactggcagct 136
Query: 792 tcagtgaatacgaagatactcantgttctcatattctataaaggactgaggatagtgtaa 851
|||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
Sbjct: 137 tcagtgaatacgaagatactca-tgttctcatattctataaagaactga-gatagtgt-a 193
Query: 852 atttggttaatggactacttttgnaagcatattcaaatgtatcatac 898
||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 194 atttggttaatcgactacttttg-aagcatatacaaatgtatcatac 239
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5990
Number of Sequences: 1807
Number of extensions: 5990
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 2
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)