BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC12RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1253 920 0.0
>3x_Contig1253
Length = 5628
Score = 920 bits (464), Expect = 0.0
Identities = 666/720 (92%), Gaps = 10/720 (1%)
Strand = Plus / Minus
Query: 46 gctttagagaattcggggaaagtt-catggagtcggcgttgccgttctctttcacagaat 104
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 1445 gctttagagaattcggggaaagctacatggagtcggcgttgccgttctctttcacagaat 1386
Query: 105 tcaataccttgaagttcatttcaagtttgagtgaccataaacctgctcctgttacggccg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1385 tcaataccttgaagttcatttcaagtttgagtgaccataaacctgctcctgttacggccg 1326
Query: 165 tggcatctaacaattataagccatacattgtcacaggttctgacgatggttcttagatta 224
||||| ||||||||||||||||||||||||||||||||||||||||||| | | || |
Sbjct: 1325 tggcagctaacaattataagccatacattgtcacaggttctgacgatggctttctgaaaa 1266
Query: 225 tctgggatttatcgaaaatagaaaaagggtctactttcaagcccgtagtaaatcatgagc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 tctgggatttatcgaaaatagaaaaagggtctactttcaagcccgtagtaaatcatgagc 1206
Query: 285 taggatcatccatcgttgatataactttcattgcgaattatgatgtgttcgtggtttcag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 taggatcatccatcgttgatataactttcattgcgaattatgatgtgttcgtggtttcag 1146
Query: 345 caaatgatggatccatcaatttgttcaaaatacacttcaaaaatcacataacgaaccgcg 404
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1145 caaatgatggatccatcaatttgttcaaaataaacttcaaaaatcacataacgaaccgcg 1086
Query: 405 aaatacaatgtatcgaaaatctacgacatttcacgtttaaagaagcaaaagaatatggca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 aaatacaatgtatcgaaaatctacgacatttcacgtttaaagaagcaaaagaatatggca 1026
Query: 465 cttctttatcgtacactaaatgatgatttcaaaccttggataattactggtaactaaccc 524
||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||
Sbjct: 1025 cttctttatcgtacact-aatgatgattcaaaaccttggataattact-gtaactaa-cc 969
Query: 525 ttggccgaattgttattttagattttaaaaacatgtaagtcgtccatcaaattctaatat 584
||| || |||||||| |||||| | | | |||||| ||||||||||||||| ||||||
Sbjct: 968 atggtcgtattgttatgttagatatcagagacatgtcagtcgtccatcaaatcgtaatat 909
Query: 585 cgcccgtgtttggttaattttcaacttcctctggttatttctgaccggccattggctact 644
||||||||| ||||| | |||||||||| ||| |||| |||||| ||| ||||||||||
Sbjct: 908 cgcccgtgtatggttcagtttcaacttcgtct-gttagttctga-cggtcattggctac- 852
Query: 645 tatgtggaacaaacccacgggcctttacttctttgggaatttcacttttaaaattttggg 704
|||||||||| ||| ||||| | |||||||||| ||||| |||| |||||||||||||
Sbjct: 851 tatgtggaac-aacacacggagcattacttcttt-ggaatctcacatttaaaattttggt 794
Query: 705 gaaatttttggtgttttggaaaataaagttctttttgcaaggtctttctttttcaaaagg 764
|||| | ||||||||||||| | ||||| || || |||||||| ||||||| |||||||
Sbjct: 793 gaaa-tcttggtgttttggagatgaaagtcctattcgcaaggtcattcttttccaaaagg 735
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,623
Number of Sequences: 1807
Number of extensions: 23623
Number of successful extensions: 454
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)