BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZD01RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1207 0.0
>3x_Contig1785
Length = 37935
Score = 1207 bits (609), Expect = 0.0
Identities = 688/708 (97%), Gaps = 5/708 (0%)
Strand = Plus / Minus
Query: 70 cagcataatgccacgtgttgcattagattgtaacgtgaacaataatttactggatgatga 129
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22042 cagcaaaataccacgtgttgcattagattgtaacgtgaacaataatttactggatgatga 21983
Query: 130 cccttttttcttttatattaatgacgctgacgaattgaactatttgaaaatgctaggagt 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21982 cccttttttcttttatattaatgacgctgacgaattgaactatttgaaaatgctaggagt 21923
Query: 190 gaacgtatcccccgagaaaattgaagaaatcttgatagaatttcgggcacaagtgctagc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21922 gaacgtatcccccgagaaaattgaagaaatcttgatagaatttcgggcacaagtgctagc 21863
Query: 250 attagatactatcaataccttagaaaggcagcaaaattatctttctgctgaagaatcact 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21862 attagatactatcaataccttagaaaggcagcaaaattatctttctgctgaagaatcact 21803
Query: 310 ttctgctctcctttataaagaagcacaacgaccaccactgaagactaatagttacaaaca 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21802 ttctgctctcctttataaagaagcacaacgaccaccactgaagactaatagttacaaaca 21743
Query: 370 tttgttcaagaaaatccttatattctggcgtaaacaccaatatgcgatgaatacagacat 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21742 tttgttcaagaaaatccttatattctggcgtaaacaccaatatgcgatgaatacagacat 21683
Query: 430 atctttagtagattcatcggtaacttcttgttcatcttccatttttccacaaagagtaca 489
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21682 atctctagtagattcatcggtaacttcttgttcatcttccatttttccacaaagagtaca 21623
Query: 490 aacgatacagcatgaaggatcgtttttcagtctcacgaatagtctcatatcaccaaatta 549
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 21622 aacgatacagcatgaaggatcgtttttcagtctcacgaatagtctcatatcaccaaataa 21563
Query: 550 aaggaaaaagacgtggtttatacaaagacatttgaaaaagcttttncagctacattgaac 609
||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||
Sbjct: 21562 aaggaaaaagacgtggtttatacaaggacatttgaaaaagcttttcaagctacaatgaac 21503
Query: 610 aaccaaaaaaaaactgtaactc-agttttagcgtttgatatagtaatgtttttacttaaa 668
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 21502 aaccaaaaaaaaactgtaactcaagtttaagcgtttgatatagtaatgtttttacttaaa 21443
Query: 669 tatctctatcttataggttatcagtttcgaatg-atcgtcattagtgttaggca-ctttg 726
||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||
Sbjct: 21442 tatctctatcttataggttatcaagttcgaatgaatcgtcatcagtgttaggcacctttg 21383
Query: 727 tttaaccaga-ttgttttttg-tggtttgtccccagtaaagggtgcct 772
| |||||||| |||||||||| |||||||||| ||||| |||||||||
Sbjct: 21382 tataaccagatttgttttttgctggtttgtccgcagtagagggtgcct 21335
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,469
Number of Sequences: 1807
Number of extensions: 10469
Number of successful extensions: 149
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)