BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZD02FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1732 1338 0.0
>3x_Contig1732
Length = 24266
Score = 1338 bits (675), Expect = 0.0
Identities = 728/739 (98%), Gaps = 5/739 (0%)
Strand = Plus / Minus
Query: 85 aggttcgggatataaggttcttgatcttgtacgctgcaaaagtacatacataccttctcc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11456 aggttcgggatataaggttcttgatcttgtacgctgcaaaagtacatacataccttctcc 11397
Query: 145 agattccgtttacaagaagcctaaatcaaaggagcagattgctagggagaagcatgaagc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11396 agattccgtttacaagaagcctaaatcaaaggagcagattgctagggagaagcatgaagc 11337
Query: 205 ggatttgaaatctgttttctggattattaggtacggggccattgcaaggtccgagaagtt 264
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11336 ggatttgaaatctgacaactggattattaggtacggggccattgcaaggtccgagaagtt 11277
Query: 265 ttcgaaagctttaacgaaatacattcttgccgcatatgtggtgttcattctatatgggtt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11276 ttcgaaagctttaacgaaatacattcttgccgcatatgtggtgttcattctatatgggtt 11217
Query: 325 aaactataccaagaagctttataagaaggacaaggagttagaagatattagtgcaaagat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11216 aaactataccaagaagctttataagaaggacaaggagttagaagatattagtgcaaagat 11157
Query: 385 tgatatgggagtagcaaatgaatatgagttgttgcgctataaggaactaaaaaatacgtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11156 tgatatgggagtagcaaatgaatatgagttgttgcgctataaggaactaaaaaatacgtt 11097
Query: 445 aagaacaagagatgtggagaaattgaaacaataccaaaagattatagagaaagatgggac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11096 aagaacaagagatgtggagaaattgaaacaataccaaaagattatagagaaagatgggac 11037
Query: 505 tgagaatttggataagattaccttggaaaacaacgatcaaaacaagattaacgagaaaat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11036 tgagaatttggataagattaccttggaaaacaacgatcaaaacaagattaacgagaaaat 10977
Query: 565 tctacctgctagggataccactgatttctatgaaatgaaggcagaagagtacgatgaggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10976 tctacctgctagggataccactgatttctatgaaatgaaggcagaagagtacgatgaggg 10917
Query: 625 tgtgagttttgaagaaatgatgatcagaatgggtaaaagacgtaagtggctcatgaaaca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10916 tgtgagttttgaagaaatgatgatcagaatgggtaaaagacgtaagtggctcatgaaaca 10857
Query: 685 ttgtaaaggagatgttctcgaagtcgcttggggtactggtagggaatatcaaatatttag 744
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 10856 ttgtaaaggagatgttctcgaagtcgcttgtggtactggta-ggaatatcaaatatttag 10798
Query: 745 acccaacgaagatcaactcaatcacattcttgggatgcatcgggaaaagatgatgggaaa 804
||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||
Sbjct: 10797 acccaacgaagatcaactcaatcacattctt-ggatgcatc-ggaaaagatgat-ggaaa 10741
Query: 805 tcaccaattaaaaaattca 823
||| ||| |||||||||||
Sbjct: 10740 tca-caaataaaaaattca 10723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7397
Number of Sequences: 1807
Number of extensions: 7397
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)