BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZD03FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1119 1084 0.0
3x_Contig706 502 e-142
>3x_Contig1119
Length = 5045
Score = 1084 bits (547), Expect = 0.0
Identities = 547/547 (100%)
Strand = Plus / Plus
Query: 87 cagaatccatgattgaatttgtcaaatcactatcgcaaaaatctcgtctccttaagctct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4499 cagaatccatgattgaatttgtcaaatcactatcgcaaaaatctcgtctccttaagctct 4558
Query: 147 tgttgagttcattatccaaatcgataaccataaaaaaggatactgtaactacagcagcat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4559 tgttgagttcattatccaaatcgataaccataaaaaaggatactgtaactacagcagcat 4618
Query: 207 atctatctgagctaaatcaactccacaattcaatagtttctaactctgatactttaattt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4619 atctatctgagctaaatcaactccacaattcaatagtttctaactctgatactttaattt 4678
Query: 267 catccaccttagtgaacgctgaatatgaagtagatccagaagtggaaacatcagtacttg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4679 catccaccttagtgaacgctgaatatgaagtagatccagaagtggaaacatcagtacttg 4738
Query: 327 ctatcaataatgatgttaagaaagttataaaaattattacacagctaaacggttcagatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4739 ctatcaataatgatgttaagaaagttataaaaattattacacagctaaacggttcagatg 4798
Query: 387 agtccaagttgaaatggatacaggtatggtcaaataagtggagttctttgaataattagt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4799 agtccaagttgaaatggatacaggtatggtcaaataagtggagttctttgaataattagt 4858
Query: 447 ttagttttatctgtcttctgttttaaaggcatctgaaagtaatatataggtacaccgtac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4859 ttagttttatctgtcttctgttttaaaggcatctgaaagtaatatataggtacaccgtac 4918
Query: 507 atacaaataccaaatcataattccacagtctagtcagatgcagttcaagtagggtgaatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4919 atacaaataccaaatcataattccacagtctagtcagatgcagttcaagtagggtgaatt 4978
Query: 567 actttcaccaatcatcaccgttgtctatatcatcgtcacgagcaactttattctttcttt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4979 actttcaccaatcatcaccgttgtctatatcatcgtcacgagcaactttattctttcttt 5038
Query: 627 ggtttaa 633
|||||||
Sbjct: 5039 ggtttaa 5045
>3x_Contig706
Length = 2070
Score = 502 bits (253), Expect = e-142
Identities = 285/292 (97%), Gaps = 3/292 (1%)
Strand = Plus / Minus
Query: 597 catcgtcacgagcaactttattctttctttggtttaaagccgcagctagggcatcagcca 656
|||||||||||||||| |||| | | ||||||||||||||||||||||||||||||||||
Sbjct: 2070 catcgtcacgagcaacgttatccgt-ctttggtttaaagccgcagctagggcatcagcca 2012
Query: 657 aggacgcaggagcaccaacaggtccgccagttgacccgcctgtgggttgagataccggcg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 aggacgcaggagcaccaacaggtccgccagttgacccgcctgtgggttgagataccggcg 1952
Query: 717 catcactacgaacttcttgtaacaaaggacttggcttttcaagttgagatttatccacct 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 catcactacgaacttcttgtaacaaaggacttggcttttcaagttgagatttatccacct 1892
Query: 777 tacggagggaattcagaccagctccacgaatcgatgctaataaggcatcccttccagcat 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 tacggagggaattcagaccagctccacgaatcgatgctaataaggcatcccttccagcat 1832
Query: 837 cacccagtattttcaacanaaccagatcctgctttcaggttgattaaatgca 888
|| ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 1831 ca-ccagtattttcaacaaaaccagatcctgc-ttcaggttgattaaatgca 1782
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6233
Number of Sequences: 1807
Number of extensions: 6233
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)