BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZD03RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig468 1364 0.0
>3x_Contig468
Length = 2584
Score = 1364 bits (688), Expect = 0.0
Identities = 828/866 (95%), Gaps = 7/866 (0%)
Strand = Plus / Plus
Query: 70 aaagttcaaacgattgacaatgatagcccagaaacgcctccaaatgaaccatccatgaaa 129
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 202 aaagttcaaacgattgacaatgatagcccagaaacgcctccaaatgaaccagccatgaaa 261
Query: 130 gttcatttcaaaccttcaaatcatgaaattactatttatgattatgtgtatgaa-tctcc 188
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 262 gtacatttcaaaccttcaaatcatgaaatttctatttatgattatgtgtatgaaatctcc 321
Query: 189 aaatgcaaaaaactccaagaacatagatttaatgattgtggatacaaattctgtgacgtt 248
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 322 aaatgcattaaactccaagaacatagatttaatgatggtggatacaaattctgtgacgtt 381
Query: 249 tggtcaagtttcaacgaattgctt-atgtttgaaaacgggctgcgatcctttgagatcat 307
|||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 382 tggt-aagtttcaacgaattgcttcatgtttgaaaacgggctgtgatcctttgagatcag 440
Query: 308 atcaatcaattgtagctctatgcgattatattttaaccctttcaaaagaatgcaatgcag 367
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaatcaattgtagctctatgcgattatattttaaccctttcaaaagaatgcaatgcaa 500
Query: 368 agctttgtactctcgaaagctctaaggaacaggaagatgaagatataaagttcaaacttg 427
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctttgtactctcgaaagcactaaggaacaggaagatgaagatataaagttcaaacttg 560
Query: 428 cgcaaaccgaagatctaaaagctcgattagaagatatcacatatatatacgttaaaaata 487
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 561 cgcaaaccgaagatctaaaagctcgattagaagatatcacaaataaatacgttaaaaata 620
Query: 488 ctaaagaaatcgataatgtgaaggcagagaataacattcttaaactgaaattgaaggaag 547
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 ctaaagaaatcgttaatgtgaaggcagagaataacaatcttaaactgaaattgaaggaag 680
Query: 548 ttatcgaattcaacaatatttgcaaacagttctttgttgaatataagggccaaattgcgt 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttatcgaattcaacaatatttgcaaacagttctttgttgaatataagggccaaattgcgt 740
Query: 608 tgttgagtgaacaaatcaataacgaggttactaaaaacgaaacttctaaagagacacagg 667
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 741 tgttgagtgaacaaatcaataacgaggttactaaaaacgaaactttaaaagagaaacagg 800
Query: 668 atagaatttccaagaactatgaatctgaaaaatc-cggtatatggaactttcagaaagtt 726
| ||||||||||||||||||||||||| |||||| ||| |||||||||| ||||||||||
Sbjct: 801 aaagaatttccaagaactatgaatctggaaaatcacggaatatggaactgtcagaaagtt 860
Query: 727 tggctgtctctcaaggtgttttacaggatatggagaaaaaatatttagaacacatcaatt 786
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 861 tggctgtctctcaaggtgttttacaggatatggagaaaaaatatttagaaaacatcaata 920
Query: 787 agacgactggtcccgagattg-acaggacttatcatgctcacatgctgagcatttgtacc 845
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct: 921 agacgactggtcccgagattgtacaggacttatcatgctcacatgctgagaatttggacc 980
Query: 846 tcanaactaaaattga-aaaaataccaaaggaaattgcatgtttagtgaaagattgtcaa 904
||| |||||||||||| |||| ||||||||||||| ||| | |||||||||||||| |||
Sbjct: 981 tcaaaactaaaattgagaaaattaccaaaggaaatagca-ggttagtgaaagattgccaa 1039
Query: 905 aggnagcgtaagaaggtattggattt 930
||| ||||||||||||||||||||||
Sbjct: 1040 agggagcgtaagaaggtattggattt 1065
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9170
Number of Sequences: 1807
Number of extensions: 9170
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)