BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZD04FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 1356 0.0
>3x_Contig1769
Length = 25795
Score = 1356 bits (684), Expect = 0.0
Identities = 801/829 (96%), Gaps = 10/829 (1%)
Strand = Plus / Plus
Query: 90 atattgcttttcatgctacattagccactaatgtgaaaagataacatcgaaactctttag 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13407 atattgcttttcatgctacattagccactaatgtgaaaagataacatcgaaactctttag 13466
Query: 150 attacctttaaatgcctctcttcgtggaagtcggtccaatatcaccaagaccacgacgaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13467 attacctttaaatgcctctcttcgtggaagtcggtccaatatcaccaagaccacgacgaa 13526
Query: 210 tagaggcgcaggagacattcttccatctgtcaaaagaagtgaatatgctgcagccagaca 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13527 tagaggcgcaggagacattcttccatctgtcaaaagaagtgaatatgctgcagccagaca 13586
Query: 270 accaataacacagcattacataagagaagaggtactttttctatcaccgactggaattta 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13587 accaataacacagcattacataagagaagaggtactttttctatcaccgactggaattta 13646
Query: 330 aaagccgtccggaaaatcccattcttagattggacaatctgatgtttaactcttgctttt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13647 aaagccgtccggaaaatcccattcttagattggacaatctgatgtttaactcttgctttt 13706
Query: 390 tttctctcccttagcagctcttgctaggaagcaattatcttgtgcaggcttaaagtttca 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13707 tttctctcccttagcagctcttgctaggaagcaattatcttgtgcaggcttaaagtttca 13766
Query: 450 tggagaaccctattgacctggacctgtgcattgtatttctaatcgctacgcgttctgtgc 509
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 13767 tggagaaccctattgacctggacctgtgcattgtatttctaaagtctacgcgttctgtgc 13826
Query: 510 agttatactgagacatcaaatatggctgtgaagaaggagttccaataaagttatttttgg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13827 agttatactgagacatcaaatatggctgtgaagaaggagttccaataaagttatttttgg 13886
Query: 570 attagctaatgtcagggacaaaggaaatgaatgcagctctcccttgcaccagagaatggt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13887 attagctaatgtcagggacaaaggaaatgaatgcagctctcccttgcaccagagaatggt 13946
Query: 630 ctatgggagtgcaatcttccgtcgtccattgacaccagctcggttcgtacagaaagatna 689
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 13947 ctatgggagtgcaatcttccgtcgtccattgacaccagctcggttcgtacagaaagataa 14006
Query: 690 tatttaccttgccg-aaaaaacagaccatgcagtctggtgctggcgtgaggctcccccat 748
|||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14007 tatttacc-tgccgaaaaaaacagaccaggcagtctggtgctggcgtgaggctccccaga 14065
Query: 749 aggtctaggcccacacagncaaaacgacttttttcgatcacttttagtacgagaaggcag 808
|||||||||||||||||| ||||||||| || ||||||||| |||||||||||| |||||
Sbjct: 14066 aggtctaggcccacacagccaaaacgac-ttcttcgatcac-tttagtacgagagggcag 14123
Query: 809 gccccagtcccattagtttgttaacttggtaactactatttccatccccgccatcactta 868
|||||||||||||||||||| |||| |||||||||||| ||||| |||| |||||| ||
Sbjct: 14124 gccccagtcccattagtttg-taac-tggtaactacta-ttccaatcccgtcatcacgta 14180
Query: 869 tgccccttgggcaggtacatactaaatggaggagctcatgttttttccc 917
|| |||| |||||||||||||||||| || ||||| ||||||||||||
Sbjct: 14181 tg--ccttcggcaggtacatactaaat-gatgagcttatgttttttccc 14226
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5162
Number of Sequences: 1807
Number of extensions: 5162
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)