BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZD04RM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 1116 0.0
>3x_Contig1577
Length = 10627
Score = 1116 bits (563), Expect = 0.0
Identities = 614/627 (97%), Gaps = 3/627 (0%)
Strand = Plus / Minus
Query: 48 atatgatatttttattcaacaatttatatatgaacagtatatgcgatattttgagtagtt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6009 atatgatatttttattcaacaatttatatatgaacagtatatgcgatattttgagtagtt 5950
Query: 108 tatgttttattttttctttcgaagtatgtatggaagggacactagcaaatggttgttgac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5949 tatgttttattttttctttcgaagtatgtatggaagggacactagcaaatggttgttgac 5890
Query: 168 ttctttcttttgttcgaaattatggtacgagagcgagtcagccagagattccatggagtc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5889 ttctttcttttgttcgaaattatggtacgagagcgagtcagccagagattccatggagtc 5830
Query: 228 ttctgggactgagtcctccaaaacttttgtcaataataccaactcttttctttcaatttg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5829 ttctgggactgagtcctccaaaacttttgtcaataataccaactcttttctttcaatttg 5770
Query: 288 catttcagtattgaaacgttccttgctgctctttatcttgtcgtacaacaactgcttttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5769 catttcagtattgaaacgttccttgctgctctttatcttgtcgtacaacaactgcttttg 5710
Query: 348 ctcgtcagtgactttttctttccaaacctttttacatgatttacacatctcttggtacct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5709 ctcgtcagtgactttttctttccaaacctttttacatgatttacacatctcttggtacct 5650
Query: 408 gaggtgtgcgttaagcatagaattcatttttgtctgtgaatgagatattattttcataag 467
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5649 gaggtgtgcgttaagcatagaatccatttttgtctgtgaatgagatattattttcataag 5590
Query: 468 tggagtatgtcttttcaagtacgtgggacggtgcattggagcttc-tcttg-tttatgta 525
|||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 5589 tggagtatgtctttccaagtacgtgggacggtgcattggagcttcttcttgttttatgta 5530
Query: 526 cctctgtt-ccaaatttgattaaactgtagtttatattttgagcgaaaccaaagatattc 584
|||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 5529 cctctgttcccaaattagattaaactgtagtttatattttgagcgaaacaaaagatatgc 5470
Query: 585 actttgaataggacacgatatttgaaggtaccttggcagttcttcgtttcctaattttct 644
|||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 5469 acttgaaataggacacgatattgcaaggtaccttgccagttcttcgtttcctaattttct 5410
Query: 645 gaaatcgatcttattgaatttgaagaa 671
|||||||||||||||||||||||||||
Sbjct: 5409 gaaatcgatcttattgaatttgaagaa 5383
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,626
Number of Sequences: 1807
Number of extensions: 10626
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)