BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZD05RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1505 0.0
>3x_Contig1486
Length = 12131
Score = 1505 bits (759), Expect = 0.0
Identities = 836/858 (97%), Gaps = 3/858 (0%)
Strand = Plus / Minus
Query: 51 tcttcttctcctgttcataaacactttgagtacaaatcaatgcactcttgatatctggga 110
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2957 tcttcttctcctgttcagaaacactttgagtacaaatcaatgcactcttgatatctggga 2898
Query: 111 tttgatacaacatcaatattgatcaatcacgtcgttcttgctcaacggtatctgctgtgg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 tttgatacaacatcaatattgatcaatcacgtcgttcttgctcaacggtatctgctgtgg 2838
Query: 171 cagtttttatgagttccttttatagtgcataagtaagatcaaatgttttttttgattcaa 230
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2837 cagtttttatgagttccttttatagtgcataagtaagatcaaatgttttggttgattcaa 2778
Query: 231 tatataaaatttttttaatatgttaacaataatcctattaaactaatatcaaacgaattc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2777 tatataaaatttttttaatatgttaacaataatcctattaaactaatatcaaacgaattc 2718
Query: 291 aacatggcactagtgactgacattaataaaggataactgcgatctgattatagttacact 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2717 aacatggcactagtgactgacattaataaaggataactgcgatctgattatagttacact 2658
Query: 351 aacatcgaccttcaatacaccgaaagattctagaaaaagtctaaaatgtccggctctaaa 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2657 aacatcgaccttcaatacaccgaaagattctagaaaaagtctaaaatgtccggctctaaa 2598
Query: 411 gtaggagctcctatggtacctccaatcaattgcatatacaactaccttcatcatcagaca 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2597 gtaggagctcctatggtacctccaatcaattgcatatacaactaccttcatcatcagaca 2538
Query: 471 acagtaacgttttggttatacgaacaagtacagacacgtataagaggcaagatcagaggc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2537 acagtaacgttttggttatacgaacaagtacagacacgtataagaggcaagatcagaggc 2478
Query: 531 tttgatgagttcatgaatgtggtaatagatgacgctttcgaaatagctgtagatccgaaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2477 tttgatgagttcatgaatgtggtaatagatgacgctttcgaaatagctgtagatccgaaa 2418
Query: 591 agtggtaaagagagcgatgataaagcagtgtttcttgagagaattatgttgaaaggtgat 650
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2417 agtggtaaagagagcgatgataaagcagtgtttcttgggagaattatgttgaaaggtgat 2358
Query: 651 aatataacacttgttgnggcaaattgataatgcctactcagaaaatgataataggatgaa 710
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2357 aatataacacttgttgtggcaaattgataatgcctactcagaaaatgataataggatgaa 2298
Query: 711 agaaagatgcttagagtgtagaagcattgatcggactctgtcgtgtaattatataagcct 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 agaaagatgcttagagtgtagaagcattgatcggactctgtcgtgtaattatataagcct 2238
Query: 771 gtat-ttataacggaaaaatg-agcgcacttgaatttcgataacggcgacaagctctatc 828
|||| |||||||||||||||| | ||||| |||||||||||||||||||||| |||||
Sbjct: 2237 gtatattataacggaaaaatgaaaggcactgaaatttcgataacggcgacaagcactatc 2178
Query: 829 aaggcttattaagatttattgttcggaatctta-ggatctatttacattggggtgcttag 887
|||||| || ||||| ||||||||| ||||||| ||||||||||||| || | |||| ||
Sbjct: 2177 aaggctaataaagatatattgttcgtaatcttatggatctatttacaatgtgttgctcag 2118
Query: 888 attggggagaatccctta 905
|||||||||||| |||||
Sbjct: 2117 attggggagaatacctta 2100
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7811
Number of Sequences: 1807
Number of extensions: 7811
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)