BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZD06RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1518 0.0
>3x_Contig1791
Length = 39945
Score = 1518 bits (766), Expect = 0.0
Identities = 850/866 (98%), Gaps = 9/866 (1%)
Strand = Plus / Plus
Query: 49 agttctttgctgttgagtatagatcaccgtgaatggcagcaacatcgtaaccgttgtatt 108
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6326 agttctttgctgttgagaa-agatcaccgtgaatggcagcaacatcgtaaccgttgtatt 6384
Query: 109 tcaagtttctttcaacacgagaggcttcctttttgtacaaggcaaatatcaaaactttgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6385 tcaagtttctttcaacacgagaggcttcctttttgtacaaggcaaatatcaaaactttgt 6444
Query: 169 cgttctttgttgggcctgaatggtacttcttcaacagttccaacagtttttttttctttc 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6445 cgttctttgttgggcctgaatggtacttcttcaacagttccaacagttttttttcctttc 6504
Query: 229 tgaacggatccacaacttccacgatctgagtaattcttttgtttgctgacagttcatctc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6505 tgaacggatccacaacttccacgatctgagtaattcttttgtttgctgacagttcatctc 6564
Query: 289 tgttaccaatagacactttaaccggttcactcatgaaacttgaagcaagttcacgaactt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6565 tgttaccaatagacactttaaccggttcactcatgaaacttgaagcaagttcacgaactt 6624
Query: 349 cttttggccatgtcgcggtaaacatcaacgtttgtctagaggtggatcttgtttgtctaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6625 cttttggccatgtcgcggtaaacatcaacgtttgtctagaggtggatcttgtttgtctaa 6684
Query: 409 tgatttttttgatatcttcctcaaaacctttttccaacattctgtcagcttcatccaaga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6685 tgatttttttgatatcttcctcaaaacctttttccaacattctgtcagcttcatccaaga 6744
Query: 469 ccaggtagttaacatgactcaaatcaacagagccttcctctattagatccaacagtctac 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745 ccaggtagttaacatgactcaaatcaacagagccttcctctattagatccaacagtctac 6804
Query: 529 ctggagtagcaacaacgacttgggatctcctcagatcttctctttgctgatcctttggaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6805 ctggagtagcaacaacgacttgggatctcctcagatcttctctttgctgatcctttggaa 6864
Query: 589 caccaccgtatacgcaacaagatcttaaaccacacgcgtcagtaagaacaatcaaattat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865 caccaccgtatacgcaacaagatcttaaaccacacgcgtcagtaagaacaatcaaattat 6924
Query: 649 cgtaaatttgagaggccaattctctagttggtgagataacaagtaccttgacggaacttg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6925 cgtaaatttgagaggccaattctctagttggtgagataacaagtaccttgacggaacttg 6984
Query: 709 acttgtctcctgatgtgacaatgttgttgatagctggaacaccgaaagc-aaagtcttta 767
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 6985 acttgtctcctgatgtgacaatgttgttgatagctggaacaccgaaagcaaaagtc-tta 7043
Query: 768 cccgaacca-tttcagcgattaccgat-acatccttaccagctaatagatatggccagaa 825
||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |
Sbjct: 7044 cccgaaccagtttcagcga-taccgataacatccttaccagctaatagatatggccagga 7102
Query: 826 aacagcttgaattgagatttgtttttgggaactttagaattttccttttgaatctgatca 885
|||||||||||||| || ||| |||||||||| |||||| ||||||||||||||||||||
Sbjct: 7103 aacagcttgaattg-gagttggttttgggaac-ttagaaatttccttttgaatctgatca 7160
Query: 886 ataaacgacccttggggaaaagtcta 911
||||||||| ||| ||||||||||||
Sbjct: 7161 ataaacgacactt-gggaaaagtcta 7185
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8199
Number of Sequences: 1807
Number of extensions: 8199
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)