BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZD08FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1508 1463 0.0
>3x_Contig1508
Length = 7899
Score = 1463 bits (738), Expect = 0.0
Identities = 831/850 (97%), Gaps = 9/850 (1%)
Strand = Plus / Minus
Query: 91 caaccagtcgttgaacttgtcctcgaaaatgcataagaatctattgacagtggttctttc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 caaccagtcgttgaacttgtcctcgaaaatgcataagaatctattgacagtggttctttc 937
Query: 151 gacggacaggttatgagtatgtagcaataggtaaagggatccaaattggatcaaacaatc 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 gacggacaggttatgagtatgtagcaataggtaaagggatccaaattggatcaaacaatc 877
Query: 211 ttgaaatccatccacggagttgtatggttttccactaagttcggtgaagagagaccaata 270
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ttgaaatccagccacggagttgtatggttttccactaagttcggtgaagagagaccaata 817
Query: 271 tactcgagaattggcagagagatacccgtagttgaaacacaaagcgtaccagtatttacc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tactcgagaattggcagagagatacccgtagttgaaacacaaagcgtaccagtatttacc 757
Query: 331 caattctgtaagaattgaaatgcgttttggatccatagtcaaggaagtgaccatcgtttg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 caattctgtaagaattgaaatgcgttttggatccatagtcaaggaagtgaccatcgtttg 697
Query: 391 gaaactctgtggagccaacattctgttaaaaatttgatgatgtttctggtccgagtcatc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gaaactctgtggagccaacattctgttaaaaatttgatgatgtttctggtccgagtcatc 637
Query: 451 tagatctgaaccctggccatcatgagccaaagttggtttacaatgtgccaataagaacat 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tagatctgaaccctggccatcatgagccaaagttggtttacaatgtgccaataagaacat 577
Query: 511 tattctccatctgggtaaatcgaaaggattttcaaagaggctggtctcgacacattttat 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tattctccatctgggtaaatcgaaaggattttcaaagaggctggtctcgacacattttat 517
Query: 571 aagagttgcgttaagatttgcatcagttcgtatagaacacgaatgtagcaaaatattagc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aagagttgcgttaagatttgcatcagttcgtatagaacacgaatgtagcaaaatattagc 457
Query: 631 cacaataatggct-aacgtttcactttgagaagaatccggctgcacatggtagaaccagt 689
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cacaataatggctaaacgtttcactttgagaagaatccggctgcacatggtagaaccagt 397
Query: 690 gcagaatcttttggaaactagagtgatagaccgaactatctaccctagac-acttgagca 748
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 396 gcagaatcttttggaaactagagtgatagaccgaactatctaccctagacaactgaagca 337
Query: 749 accgttggcattggtctgctgtaagttccaaaccagaacatgtattcacatatgaagttc 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 336 accgttggcattggtctgctgtaagttccaaaccagaacatgtattcacatatg-agttc 278
Query: 809 atcgtttggaagcacgtttaatcgtatttaatttcagaaatactaccactaacagtcgcc 868
||||||| |||||||| ||| ||| | ||||||||| ||||||||||||||||||||||
Sbjct: 277 atcgttt-gaagcacg-ttagtcg-agttaatttcaagaatactaccactaacagtcgcc 221
Query: 869 accaaacccaaccttgaattaactatctaaccttaaaacccaactcttatatttatactt 928
||||||||||||| ||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct: 220 accaaacccaacc-tgaattaactatc-aaccttaaaacccaac-gttatatatatactt 164
Query: 929 taatacatgc 938
|||||||||
Sbjct: 163 aaatacatgc 154
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5850
Number of Sequences: 1807
Number of extensions: 5850
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)