BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZD11RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1294 0.0
>3x_Contig1762
Length = 22098
Score = 1294 bits (653), Expect = 0.0
Identities = 715/733 (97%), Gaps = 2/733 (0%)
Strand = Plus / Minus
Query: 48 gcacttacatgcagtgtatttgtcatctccgaattggtatcctccgcggtccaatttgtt 107
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 7345 gcacttacatgcagtgtattcgtcatctccgaattggtatcctccgcggtccaatttgtt 7286
Query: 108 gatgttgctctcctgttgtatgcagatcttttcctcaagttattatttaaattattgttg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7285 gatgttgctctcctgttgtatgcagatcttttcctcaagttattatttaaattattgttg 7226
Query: 168 ttgaaaccataaggtatatcagaagtcttacgacgttgtatggcattagaaagggaagcg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7225 ttgaaaccataaggtatatcagaagtcttacgacgttgtatggcattagaaagggaagcg 7166
Query: 228 cttgacccaggagtattgggagcaaggttgccgtaacttttctttctcacagagtttgat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7165 cttgacccaggagtattgggagcaaggttgccgtaacttttctttctcacagagtttgat 7106
Query: 288 gaatctaaactcaaagtcggagattttaacgtcaccgaatctgaactgtcttgtaatagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7105 gaatctaaactcaaagtcggagattttaacgtcaccgaatctgaactgtcttgtaatagt 7046
Query: 348 tgtatactatagaaaaataactgttcagtggttcgttgatagaaaagtgccactccaaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7045 tgtatactatagaaaaataactgttcagtggttcgttgatagaaaagtgccactccaaaa 6986
Query: 408 gaatctgcttttgggaagtatatgagctcaatatcatttaaatccgttggtgatgcagtg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6985 gaatctgcttttgggaagtatatgagctcaatatcatttaaatccgttggtgatgcagtg 6926
Query: 468 gatgggaattgaatggacccaaatggtgacatcggatgagtgatgcaaataaatctatag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6925 gatgggaattgaatggacccaaatggtgacatcggatgagtgatgcaaataaatctatag 6866
Query: 528 ttctcaaaattcgcattatagtccaaggtatcaggctgcattaccctctgcaatataagt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865 ttctcaaaattcgcattatagtccaaggtatcaggctgcattaccctctgcaatataagt 6806
Query: 588 ccatttttgaagatacatgctttagatgtgtggaaaggtaatgaaaccacaaacgaatcg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6805 ccatttttgaagatacatgctttagatgtgtggaaaggtaatgaaaccacaaacgaatcg 6746
Query: 648 ttgtcgttaagatagtgggaatgtacagcgttttttaatacaatgcataaggttaacccc 707
|||||| ||||||||||| |||||||||||| ||| |||||||||||||| ||||| |||
Sbjct: 6745 ttgtcgctaagatagtggaaatgtacagcgtctttcaatacaatgcataaagttaaaccc 6686
Query: 708 aaat-atcccatcgtttgaaa-caaaaaatattccgggagtgtcaaaattgtccctccta 765
|| | |||||||||||||||| || ||||||| | |||||||| ||||||| ||| |||
Sbjct: 6685 aagtcatcccatcgtttgaaaccagaaaatatcaccggagtgtcgaaattgtaccttcta 6626
Query: 766 aggcttgatccct 778
|||| ||||||||
Sbjct: 6625 aggcatgatccct 6613
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7127
Number of Sequences: 1807
Number of extensions: 7127
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)