BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZD12RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1620 438 e-123
3x_Contig783 188 1e-47
>3x_Contig1620
Length = 12263
Score = 438 bits (221), Expect = e-123
Identities = 238/244 (97%)
Strand = Plus / Plus
Query: 46 gcttcgtaagcaaagaaaccaaattcttagcgttcgacattacttttttcagtagagctt 105
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12020 gcttcgtaagcaaagaaaccaaatccttagcgttcgacattacttttttcagtagagctt 12079
Query: 106 atttccttcggaaattcctcaattacgatagcaatgagtcgatggatctctatcgtgaga 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12080 atttccttcggaaattcctcaattacgatagcaatgagtcgatggatctctatcgtgaga 12139
Query: 166 caactattcgttggtccctatgaagtgaatttcgataatccatttttctcttcatctttt 225
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 12140 caactattcgttggtccctatgaagtgaatttcgataatccatttttttcttcaactttt 12199
Query: 226 tttcattggcgcaatgttaaaagaatgaaaaaaatggcaaagatctggatgagcatatgt 285
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 12200 tttcattgttgcaatgttaaaagaatgaaanaaatggcaaagatctggatgagcatatgt 12259
Query: 286 gaaa 289
||||
Sbjct: 12260 gaaa 12263
>3x_Contig783
Length = 2733
Score = 188 bits (95), Expect = 1e-47
Identities = 212/239 (88%), Gaps = 9/239 (3%)
Strand = Plus / Plus
Query: 583 cgactctttaagcagtaactaaacgttgaacatgcagccggttattttcaaggttctcat 642
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||
Sbjct: 9 cgactctttaagcagtaactaaacgttgagcatgcagccgg-tattttcaaggtttccat 67
Query: 643 acgcctccaaatcgggcctttatttcactggcttccagaggttatgcgggtgtcacggaa 702
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 68 acgcctccaaatcggg-ctttatttcactggcttccagaggttatgc-ggtgtcacggaa 125
Query: 703 tttaagttcccgtcttcaagtccattttaaaatccgaaccccagagcaaactccaagatg 762
|| | ||||| || ||||||||| ||||| || |||| ||||||||| || | |||||
Sbjct: 126 ttcaggttccagt-atcaagtccaatttaagat-cgaagcccagagcagac-acgagatg 182
Query: 763 gaacacccaagcgaacccgcccggtgaaatattaggaaaagttatggggaaaggtgatc 821
||||||| ||||||| ||| |||||| || | |||||||||| || |||||||||||||
Sbjct: 183 gaacaccaaagcgaaaccg-ccggtg-aagaataggaaaagtaat-gggaaaggtgatc 238
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7718
Number of Sequences: 1807
Number of extensions: 7718
Number of successful extensions: 180
Number of sequences better than 1.0e-20: 2
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)