BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZE03FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1428 1473 0.0
>3x_Contig1428
Length = 9146
Score = 1473 bits (743), Expect = 0.0
Identities = 800/815 (98%), Gaps = 3/815 (0%)
Strand = Plus / Minus
Query: 91 ccaagtggatcagttagttaag-tcccaatcatctatcaagctagtggctagcgctctta 149
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7714 ccaagtggatcagttagttaagctcccaatcatctatcaagctagtggctagcgctctta 7655
Query: 150 ttcaaccagaaggtactcgctggactgtctcatttcccgaacagcggaatattaccgaac 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7654 ttcaaccagaaggtactcgctggactgtctcatttcccgaacagcggaatattaccgaac 7595
Query: 210 gattaatttatcgaacgatacggcggaaaacttttcaataactatggaacctgtattctc 269
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7594 gataaacctatcgaacgatacggcggaaaacttttcaataactatggaacctgtattctc 7535
Query: 270 gagtagaatctcaattaaatggggtgaacaagagccccacgaggataccaatacatgggt 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7534 gagtagaatctcaattaaatggggtgaacaagagccccacgaggataccaatacatgggt 7475
Query: 330 ccttactgctggtaatgggaagttcgtagatgcaagaattgacttaaaaaccaatatacc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7474 ccttactgctggtaatgggaagttcgtagatgcaagaattgacttaaaaaccaatatacc 7415
Query: 390 acagtggttaataactggagaagaacaagaaattcctacaaaagacggctacgagttttc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7414 acagtggttaataactggagaagaacaagaaattcctacaaaagacggctacgagttttc 7355
Query: 450 tttgaaatttgttcatgaactggattctgtacatggaaatgatcccgagcgtagtgctga 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7354 tttgaaatttgttcatgaactggattctgtacatggaaatgatcccgagcgtagtgctga 7295
Query: 510 ttttggtcatttcaaatccctgacatatagtagtagactcgaggaaggggagatgtataa 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7294 ttttggtcatttcaaatccctgacatatagtagtagactcgaggaaggggagatgtataa 7235
Query: 570 tgtttctgaggagagagtcatgacgtataaagaaatttggcaaaccattgacccaataag 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7234 tgtttctgaggagagagtcatgacgtataaagaaatttggcaaaccattgacccaataag 7175
Query: 630 atcttcaacagatcatctagtacccgtagagtctgatatatatgatggatctagtgtcac 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7174 atcttcaacagatcatctagtacccgtagagtctgatatatatgatggatctagtgtcac 7115
Query: 690 gtctattgtctgggagctgtcggacgacgccaagaataatgcacgcgggagattgatcag 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7114 gtctattgtctgggagctgtcggacgacgccaagaataatgcacgcgggagattgatcag 7055
Query: 750 tatatgaaaagttagtcaaggaattgtggaatataacggattgtttcagtgcattagaac 809
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7054 tataggaaaagttagtcaaggaattgtggaatataacggattgtttcagtgcattagaac 6995
Query: 810 gtggaataactcaggggtataccaatacgggtctcaatgtggaaaatatttttgggccgt 869
|||||||||||||| ||||||||||||||| |||| |||||||| | |||||||||| ||
Sbjct: 6994 gtggaataactcagtggtataccaatacggttctc-atgtggaagaaatttttgggcagt 6936
Query: 870 ttaatgaagggattgagcccttacaatgcccaatt 904
|| ||||||||||||||| || ||||| |||||||
Sbjct: 6935 tt-atgaagggattgagcactcacaattcccaatt 6902
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5551
Number of Sequences: 1807
Number of extensions: 5551
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)