BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZE03RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1081 835 0.0
3x_Contig1392 807 0.0
>3x_Contig1081
Length = 6793
Score = 835 bits (421), Expect = 0.0
Identities = 441/446 (98%), Gaps = 2/446 (0%)
Strand = Plus / Plus
Query: 461 atataatatgaaattaaagttatatgagtatctgggattaatcatagggctgctcattgc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 atataatatgaaattaaagttatatgagtatctgggattaatcatagggctgctcattgc 173
Query: 521 gttagaaccatcgtacatccatcccgatgagcatttccaaacattagaacccattttcac 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 gttagaaccatcgtacatccatcccgatgagcatttccaaacattagaacccattttcac 233
Query: 581 agcatggactggagctaaaggtactgctacatgggaatttcttccagaaaatccttgcag 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 agcatggactggagctaaaggtactgctacatgggaatttcttccagaaaatccttgcag 293
Query: 641 aagtatcactattttgaggctctattatacacctctgctatggctgaatcaacatatatt 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aagtatcactattttgaggctctattatacacctctgctatggctgaatcaacatatatt 353
Query: 701 ccacttgaaacccttgggtctattgtatctttatcggctgcagaactatttactctatac 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ccacttgaaacccttgggtctattgtatctttatcggctgcagaactatttactctatac 413
Query: 761 ngcagtggtcatattcttnctcgagttttgcgaggtctccataacgcataanactaaagc 820
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 414 ggcagtggtcatattcttcctcgagttttgcgaggtctccataacgcataaaactaaagc 473
Query: 821 aaaattcttcatcagaacctcatatgtcacttngggtctttcaaagccatacgtttttcc 880
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 474 aaaattcttcatcagaacctcatatgtcactt-gggtctttcaaagccatacg-ttttcc 531
Query: 881 aattcccttgaaacaataatattgtt 906
||||||||||||||||||||||||||
Sbjct: 532 aattcccttgaaacaataatattgtt 557
>3x_Contig1392
Length = 9092
Score = 807 bits (407), Expect = 0.0
Identities = 439/447 (98%), Gaps = 2/447 (0%)
Strand = Plus / Minus
Query: 41 gcttacttgtcaaaaaacttttgttagaaaacttttgaatcctttggtatggttcgatga 100
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 448 gcttacttgtcaaaaaacttttgtcagaaaacttttgaatcctttggtatggttcgatga 389
Query: 101 ga-ttgcaaaaatgaatttgaggccaaaaagcgagttaacaccagattgtaaatatcgtt 159
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gacttgcaaaaatgaatttgaggccaaaaagcgagttaacaccagattgtaaatatcgtt 329
Query: 160 aaagagaaacgctgtttcagtccgttgaatcatcatagtggttggtgataatattttgta 219
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 328 aaagagaaacgctgtttcagtccgttgaatcatcatagtggttggtgataatacattgaa 269
Query: 220 tctgtctctatctcatcgagattgaaaaaaaaacgaaaatttgaaccacacatgcatcag 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gctgtctctatctcatcgagattgaaaaaaaaacgaaaatttgaaccacacatgcatcag 209
Query: 280 aacaccacaccaaaattgcaatgtgttggtagttttgttgacatttaatatgccaacctg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aacaccacaccaaaattgcaatgtgttggtagttttgttgacatttaatatgccaacctg 149
Query: 340 agctgttagtttccaaggccatgtaagtaggttaattgaagaatgtacttataatgtcaa 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 agctgttagtttccaaggccatgtaagtaggttaattgaagaatgtacttataatgtcaa 89
Query: 400 ttgacattgaatctttccctgagctgcaaaaaggcggtacttctaacactgtatccttct 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ttgacattgaatctttccctgagctgcaaaaaggcggtacttctaacactgtatccttct 29
Query: 460 catataatatgaaattaaagttatatg 486
|||||||||| |||| |||||||||||
Sbjct: 28 catataatat-aaatgaaagttatatg 3
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7415
Number of Sequences: 1807
Number of extensions: 7415
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)