BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZE04FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig865 1179 0.0
>3x_Contig865
Length = 2537
Score = 1179 bits (595), Expect = 0.0
Identities = 689/715 (96%), Gaps = 4/715 (0%)
Strand = Plus / Plus
Query: 85 ctcttccaattttgctagctccttttctaaaatgttacgtttgtctttagattgatccaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 ctcttccaattttgctagctccttttctaaaatgttacgtttgtctttagattgatccaa 1474
Query: 145 ttcattagtcatgtcattttctatatcttgacttaacttgttgatatccttaatcatgga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1475 ttcattagtcatgtcattttctatatcttgacttaacttgttgatatccttaatcatgga 1534
Query: 205 ctgattagcttctgtgatattcttccattccgtctgaaactctaccatccacttctcttt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1535 ctgattagcttctgtgatattcttccattccgtctgaaactctaccatccacttctcttt 1594
Query: 265 aagatttgagtatttcttatcaagttcttcctttaattggttaatgacattgtcattatt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1595 aagatttgagtatttcttatcaagttcttcctttaattggttaatgacattgtcattatt 1654
Query: 325 atttacctcatcgtttaagttatgtatgtccttcaataaatgttccttttcttgtttaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1655 atttacctcatcgtttaagttatgtatgtccttcaataaatgttccttttcttgtttaaa 1714
Query: 385 cttttgaatcttttcaaattcaatctgctgcacttcaaatttgaatttcgactctgtttc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1715 cttttgaatcttttcaaattcaatctgctgcacttcaaatttgaatttcgactctgtttc 1774
Query: 445 attcatttcacagtggtattttccctctatcttctttatttctagatcaaatccgtttct 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1775 attcatttcacagtggtattttccctctatcttctttatttctagatcaaatccgtttct 1834
Query: 505 cataaactctaacttcaattcatgatcttgatccatgctattcaattcattctgctttaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 cataaactctaacttcaattcatgatcttgatccatgctattcaattcattctgctttaa 1894
Query: 565 cccgatttgtcgtactttcacttgtttcttctctttcaaattgtttattttggactctac 624
||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||
Sbjct: 1895 cccgatttgtcgtactttcacttgtttctcctctttcaaattgttcattttgaactctac 1954
Query: 625 agtttccactttgcttttcaacgaattcatcttattctgtgcgggatttcaacttgatct 684
|||||||||||||||||||||||| ||||||| || |||||||| | |||||||||||||
Sbjct: 1955 agtttccactttgcttttcaacgagttcatctcatcctgtgcggta-ttcaacttgatct 2013
Query: 685 tttttcttgacaactttttttgcattctattccaattctttcagtgtttctttgaaaaag 744
||||||| ||||||| || ||||| |||||| || ||||||||| |||||||| |||||
Sbjct: 2014 tttttctggacaactcttcttgcaatctatt-cagttctttcaggttttctttgtaaaag 2072
Query: 745 aa-gtcaaaagaatttagcttctattttcaaaactgggccgtgagaaaccttctt 798
|| |||| | || || |||||||||||||| |||||| ||||||| ||||||||
Sbjct: 2073 aatgtcatatgagttgagcttctattttcagtactggg-cgtgagagaccttctt 2126
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,454
Number of Sequences: 1807
Number of extensions: 10454
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)