BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZE04RM1.SCF screened BAC_end
(1068 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1541 379 e-105
>3x_Contig1541
Length = 10565
Score = 379 bits (191), Expect = e-105
Identities = 304/339 (89%), Gaps = 2/339 (0%)
Strand = Plus / Minus
Query: 71 actgcagcacccgtaagaactgcacagagcgttgacaatgatgatcaacctgagcatgag 130
||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct: 7184 actgcagcacccgtaagccctgacaagagcgttgtcaatgatgatcaacctgagcatgag 7125
Query: 131 acagatgaagcacacaatgaagatacgcgtagcaatgaaactgatatacgaagtggtgat 190
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7124 acagatgaagcacacaatgaagatacgcgtagcaatgaaactgagatacgaagtggtgat 7065
Query: 191 catgatcaagaaactggaatgaatattgttttatttaatgcaacaaatcaggaacccggg 250
||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |
Sbjct: 7064 catgatcaagaaactggaatgaatactgtttcagctaatgcaacaaatcaggaacccgtg 7005
Query: 251 tcagttgtttttttttatgagctccgaggttcaaggcaaactcaaatcgaggatcatgat 310
||||||| | | ||||||| |||||||||||||| || |||||||||||||| |||
Sbjct: 7004 tcagttggctctcggaatgagcttcgaggttcaaggcagacacaaatcgaggatcaagat 6945
Query: 311 atcaatcttacatatgttcagtagcagttaatccttcatcccgctataacgctctaaagg 370
| ||||| |||| |||||||| |||||||||||||||| ||||||||||||| | ||| |
Sbjct: 6944 aacaatcatacaaatgttcagcagcagttaatccttcaacccgctataacgc-cgaaaag 6886
Query: 371 tttcctaggagatgatacggtgtcgagtactgataaatt 409
| |||||||||||||||||| |||||||| |||| ||||
Sbjct: 6885 tctcctaggagatgatacgg-gtcgagtattgattaatt 6848
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,758
Number of Sequences: 1807
Number of extensions: 10758
Number of successful extensions: 106
Number of sequences better than 1.0e-20: 1
length of query: 1068
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1052
effective length of database: 10,329,639
effective search space: 10866780228
effective search space used: 10866780228
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)