BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZE08RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1374 0.0
>3x_Contig1776
Length = 26138
Score = 1374 bits (693), Expect = 0.0
Identities = 824/861 (95%), Gaps = 7/861 (0%)
Strand = Plus / Plus
Query: 44 gctttaaaggagaaaagaaaagcctccagaaccaaggtggaaggtgcgccaagttcaaga 103
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 13276 gctttaaaggagaaaagaaaagccccaggaaccaaggtggaaggtgcgccaagttcaaga 13335
Query: 104 gaagctattcttgctcaaagaaaacgtacacaagaggcaagggccaccaagttagattct 163
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 13336 gaagctattcttgctcaaagaaaacgtagacaagaggcaagggccaccaagttagattct 13395
Query: 164 gaaaaagctggtgatgtgtcttctgatgatagcgcagattctgattcggactcgtatgca 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 13396 gaaaaagctggtgatgtgtcttctgatgatagcgcagattctgattcggactcggatgca 13455
Query: 224 gaagatgctcacgtttccaagaaacatcgtcgcaatggtgatgaagagatttcagccaaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13456 gaagatgctcacgtttccaagaaacatcgtcgcaatggtgatgaagagatttcagccaaa 13515
Query: 284 gatgttatgttccaaagtattcaattcaatgacggtacaaaggctacatctgatttatcg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13516 gatgttatgttccaaagtattcaattcaatgacggtacaaaggctacatctgatttatcg 13575
Query: 344 catgtaagaaagggtgaaagaaaaaagggacctgccaaaaaggacgttaaagctcattta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13576 catgtaagaaagggtgaaagaaaaaagggacctgccaaaaaggacgttaaagctcattta 13635
Query: 404 agactgctagagacaaagaaacaatcattagaatcaagagatgaattggatcaaattaaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13636 agactgctagagacaaagaaacaatcattagaatcaagagatgaattggatcaaattaaa 13695
Query: 464 ctgaaagagaaggaaaaatggcaaaaagccatgttgcaagcagaaggtatcaggcttaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13696 ctgaaagagaaggaaaaatggcaaaaagccatgttgcaagcagaaggtatcaggcttaaa 13755
Query: 524 gatgatgagaaactacttcgcaaagctttgaagcgtaaagaggctaagaagcgtaagtcg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13756 gatgatgagaaactacttcgcaaagctttgaagcgtaaagaggctaagaagcgtaagtcg 13815
Query: 584 accgtcgaatggcgtgaacgtaaacaagtggtagaaaacactgttgccganagacagaag 643
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 13816 accgtcgaatggcgtgaacgtaaacaagtggtagaaaacactgttgccgaaagacagaag 13875
Query: 644 agaagagaggaaaatctacagattagaaaggactattaagtgttagaagaagagcacacc 703
||||||||||||||||||||||||||||||||| || ||| || |||||||||||| ||
Sbjct: 13876 agaagagaggaaaatctacagattagaaaggacaataaag-gtaagaagaagagcaaaca 13934
Query: 704 acagaagatgaagagaatattcaggggatctgcccatttggagaaaagagcangattttg 763
||||||||||||||||| ||||| |||| ||||||||||| ||||||||||| |||||
Sbjct: 13935 acagaagatgaagagaaaattcaagggaactgcccatttgaagaaaagagcaggatttga 13994
Query: 764 aagacgtatgnaaagtgtcaagaagaaatgagctcttatcaactaatattcttcctccaa 823
| |||||||| |||||||||||||||||||||| | ||||||||||||||| | |||||
Sbjct: 13995 aggacgtatgaaaagtgtcaagaagaaatgagccttaatcaactaatattctccatccaa 14054
Query: 824 caaat-aaagcat-atatcatattt-attcttttcagttatagattaac-cttttacttt 879
||||| ||||||| ||||||||||| || |||| |||||||||||||| ||||||||||
Sbjct: 14055 caaataaaagcataatatcatatttcatcctttcaagttatagattaacgcttttacttt 14114
Query: 880 aac--tgtgcatctctatttt 898
|| | ||||||||||||||
Sbjct: 14115 taccttttgcatctctatttt 14135
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8453
Number of Sequences: 1807
Number of extensions: 8453
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)