BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZE10RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1168 0.0
>3x_Contig1720
Length = 19870
Score = 1168 bits (589), Expect = 0.0
Identities = 668/689 (96%), Gaps = 4/689 (0%)
Strand = Plus / Minus
Query: 49 aaattgggaacgctattaattttggatcgagcatttgcatatgccaaatttgcagtgttt 108
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 aaattgggaacgctattaaatttggatcgagcatttgcatatgccaaatttgcagtgttt 2185
Query: 109 tgatatgagcgataacttttaactcttggctgctgtatttctaagtgttccatgctgcta 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 tgatatgagcgataacttttaactcttggctgctgtatttctaagtgttccatgctgcta 2125
Query: 169 ttattgaagttcatattttcacttatgaaatgattcataccattattcatattcatgttc 228
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2124 ttattgaagttcatattttcacttatgaaatgattcataccattattcatatgcatgttc 2065
Query: 229 atagccataagtgactgatattctttaaaactctttggatggtttggagtaatgggggtt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2064 atagccataagtgactgatattctttaaaactctttggatggtttggagtaatgggggtt 2005
Query: 289 attacttgaggcatcgatgcccggtattcaaaaacgtgagaaacaatagcattgtcactc 348
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 2004 attacttgaggcatcgatgcccgggattcaaaaacgtgagaaacaatagcattgtcacgc 1945
Query: 349 tcaaacccgtccactgacctggcatgtttctttcgacctcctttctcatttatgaaaaaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 tcaaacccgtccactgacctggcatgtttctttcgacctcctttctcatttatgaaaaaa 1885
Query: 409 gaattacggtcatatgtggagtaattggaatgctcgaatgcgttaccattctctgcaaga 468
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 gaattacggtcagatgtggagtaattggaatgctcgaatgcgttaccattctctgcaaga 1825
Query: 469 tcgaaatcataccaattttggaattgaagaaacttttacatcttggactcctcgctcttt 528
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 tcgaaatcataccaa-tttggaattgaagaaacttttacatcttggactcctcgctcttt 1766
Query: 529 atgaatattctcatattcaggagaaacttgatatacacttccacgggttgtactgaaatg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 atgaatattctcatattcaggagaaacttgatatacacttccacgggttgtactgaaatg 1706
Query: 589 aggctgattgactttttcacggaatgcatgctcaaaataattgaatccaaactcttccgt 648
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 aggctgattgacattttcacggaatgcatgctcaaaataattgaatccaaactcttccgt 1646
Query: 649 atttaaatttctttcaattctcttcttatttcgtggaagaaaaacctgtctgattgcctt 708
|||||||||||| ||||||| ||||| ||||| |||||| ||||||||||| | | |
Sbjct: 1645 atttaaatttctgtcaattcgcttctcatttc-tggaag-tgaacctgtctgaattgcgt 1588
Query: 709 aaggaactttaaagtctctaaaacccttg 737
|||||||||| ||||| ||| ||||||||
Sbjct: 1587 aaggaactttcaagtc-ctagaacccttg 1560
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9354
Number of Sequences: 1807
Number of extensions: 9354
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)