BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZE11RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig566 1249 0.0
>3x_Contig566
Length = 2053
Score = 1249 bits (630), Expect = 0.0
Identities = 680/693 (98%), Gaps = 3/693 (0%)
Strand = Plus / Minus
Query: 67 tccactccttgcagagcaatttaactcactttgcttatttgcggatcccatgactcaacc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 tccactccttgcagagcaatttaactcactttgcttatttgcggatcccatgactcaacc 1037
Query: 127 tcctccaaacgattctcatataatttcattggatttattgcatgacctgtatctaggttc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 tcctccaaacgattctcatataatttcattggatttattgcatgacctgtatctaggttc 977
Query: 187 tttgactgcttatattgttaaactgatacccaattaccagaaagtctggaaaattcattt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 tttgactgcttatattgttaaactgatacccaattaccagaaagtctggaaaattcattt 917
Query: 247 gagcgcaaatttggaaactattacattggctattttgcagatgttgcagatttgggatta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 gagcgcaaatttggaaactattacattggctattttgcagatgttgcagatttgggatta 857
Query: 307 tagatctctagacaatttgaaagatatccaagcaagaagccctgatgcataccctaaata 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tagatctctagacaatttgaaagatatccaagcaagaagccctgatgcataccctaaata 797
Query: 367 catgacatcgtggatcccatacgatctttctccgcccgaaatggaaattctttatatgat 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 catgacatcgtggatcccatacgatctttctccgcccgaaatggaaattctttatatgat 737
Query: 427 tgcaggattatctttctattcgatgcacaagatgcactctgataagccgccgaggttgaa 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgcaggattatctttctattcgatgcacaagatgcactctgataagccgccgaggttgaa 677
Query: 487 cccattcttacctatgatgcttcgagcatggagaggtttaagttcagcattagtgttagg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cccattcttacctatgatgcttcgagcatggagaggtttaagttcagcattagtgttagg 617
Query: 547 tttgcaaatagataggtttgaggaaatgcanatgctatatggtactccagtaattgttag 606
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 616 tttgcaaatagataggtttgaggaaatgcagatgctatatggtactccagtaattgttag 557
Query: 607 tgcagtcattcgtggagcttctgcgttgcgctcaattattgcaacgattcttaacggcca 666
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 556 tgcagtcattcgtggagcttctgcgttgcgctcaattatcgcaacgattctcaacggtca 497
Query: 667 tgtggatgagaagttgcacgatttt-aacatcaacctttttggtgggttcatgttttcct 725
||||||||||||||||||||||||| |||||||||| |||||||||||||||| | ||||
Sbjct: 496 tgtggatgagaagttgcacgattttaaacatcaacc-ttttggtgggttcatg-tctcct 439
Query: 726 cattgaagaaaattttccaacgggtctctttac 758
||| |||| ||||| | ||||||| ||||||||
Sbjct: 438 catggaaggaaattatgcaacggggctctttac 406
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6518
Number of Sequences: 1807
Number of extensions: 6518
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)