BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC23ZF02FM1.SCF screened BAC_end (949 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig953 1263 0.0 >3x_Contig953 Length = 3904 Score = 1263 bits (637), Expect = 0.0 Identities = 709/725 (97%), Gaps = 6/725 (0%) Strand = Plus / Plus Query: 151 tgtgttcacgtgactcgttcagattaatctaggccacttggaaactaatcctcgaagttc 210 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1 tgtgttcacgtgactcgttcagattaatctagcccacttggaaactaatcctcgaagttc 60 Query: 211 aatgatattctatctagcacgttttaattaccttttaccgctgtaaacaccatttgttta 270 ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aatgatagccta-ctagcacgttttaattaccttttaccgctgtaaacaccatttgttta 119 Query: 271 tggcaccgagtattatctctttaactgatatcctgggcggttattggcgtttgtttttct 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120 tggcaccgagtattatctctttaactgatatcctgggcggttattggcgtttgtttttct 179 Query: 331 gttttcaaaacacgtaaatatccaataaaaacgactatttaatatagactggtttcaaag 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 180 gttttcaaaacacgtaaatatccaataaaaacgactatttaatatagactggtttcaaag 239 Query: 391 atggatacgaaccacattcaagtccatgaccaacaacaggtgaaagcagtcatttgcagt 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 atggatacgaaccacattcaagtccatgaccaacaacaggtgaaagcagtcatttgcagt 299 Query: 451 acatcgaatactgttcaaggtaccgtgagaggtgtttcctgattttacttggtgctttac 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 acatcgaatactgttcaaggtaccgtgagaggtgtttcctgattttacttggtgctttac 359 Query: 511 ttccatattttttactctgatttaaagagaagggagacatggatagatccagattgtaca 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 ttccatattttttactctgatttaaagagaagggagacatggatagatccagattgtaca 419 Query: 571 acaaaagtattcgcgaagcgtatgaaaatatggtgaagggagccggagctccgcacttaa 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 acaaaagtattcgcgaagcgtatgaaaatatggtgaagggagccggagctccgcacttaa 479 Query: 631 gcgctgatcatgataattccaaggttagcagatattctgcaagtataattcatgaggata 690 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 480 gcgctgatcatgataattccaaggttagcagatattctgcaagtataattcatgaggata 539 Query: 691 atcggcgagaaggatttggaaatagtgagttttcagacaacgagtcattgaatgaatatg 750 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 atcggcgagaaggattggaaaatagtgagttttcagacaacgagtcattgaatgaatatg 599 Query: 751 atgatgaaagggaagaaaa-gatgcggatgacgatggtgaagcagagaacgattatacac 809 |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 600 atgatgaaggggaagaaaatgatgcggatgacgatggtgaagcagagaacgattatacac 659 Query: 810 cattttag-agtcctttattccaagatgatgagtggctttgatgatgaaatcggatacgg 868 |||| || |||| || ||| |||||||||||||||| ||||||||| |||||||||||| Sbjct: 660 aatttaagaagtcattaatt-caagatgatgagtggc-ttgatgatg-aatcggatacgg 716 Query: 869 actat 873 ||||| Sbjct: 717 actat 721 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6945 Number of Sequences: 1807 Number of extensions: 6945 Number of successful extensions: 38 Number of sequences better than 1.0e-20: 1 length of query: 949 length of database: 10,358,551 effective HSP length: 16 effective length of query: 933 effective length of database: 10,329,639 effective search space: 9637553187 effective search space used: 9637553187 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)