BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC23ZF02RM1.SCF screened BAC_end
         (952 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig330                                                         1390   0.0  

>3x_Contig330 
          Length = 1954

 Score = 1390 bits (701), Expect = 0.0
 Identities = 830/869 (95%), Gaps = 3/869 (0%)
 Strand = Plus / Minus

                                                                        
Query: 51   ctttcaataaaagggtttatcttttcctagcaattgtgtttaaaactcttcaaaaatcag 110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163 ctttcaataaaagggtttatcttttcctagcaattgtgtttaaaactcttcaaaaatcag 1104

                                                                        
Query: 111  aagtgaacaagaatatggcataaagatactgtaatgaagatct-ctttaatgcaataaag 169
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1103 aagtgaacaagaatatggcataaagatactgtaatgaagatcttctttaatgcaataaag 1044

                                                                        
Query: 170  tgtttggaatgacaatcgatattggtagtattgagattatctatcatgtctatatttttt 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  
Sbjct: 1043 tgtttggaatgacaatcgatattggtagtattgagattatctatcatgtctataaattga 984

                                                                        
Query: 230  tatgatattgaatttacttttttccttttcattgttgtcaaatcaagattataaaatcca 289
             ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 983  gatgatatggaatttacttttt-ccttttcattgttgtcaaatcaagattataaaatcca 925

                                                                        
Query: 290  atgtcaatttaaaatataaaatctatgaaggaaagcgatgacatagaagatgcataaatt 349
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924  atgtcaattgaaaatataaaatctatgaaggaaagcgatgacatagaagatgcataaatt 865

                                                                        
Query: 350  atcaatgttagtcaaattttacataaaagcaatctcaaattaacaacgaatctaagcgac 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864  atcaatgttagtcaaattttacataaaagcaatctcaaattaacaacgaatctaagcgac 805

                                                                        
Query: 410  tgttcacttcatcgcgtttggtattatttgcctcttcctccaaaactccgtaaatgatgt 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804  tgttcacttcatcgcgtttggtattatttgcctcttcctccaaaactccgtaaatgatgt 745

                                                                        
Query: 470  ctttgataatggtagcacctttttcatagtcactaggttcgttgaaaacctgaacagaaa 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744  ctttgataatggtagcacctttttcatagtcactaggttcgttgaaaacctgaacagaaa 685

                                                                        
Query: 530  atctaataaacaagtgactgttgttaatttggaatggcgcataacatttatactctgcga 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684  atctaataaacaagtgactgttgttaatttggaatggcgcataacatttatactctgcga 625

                                                                        
Query: 590  gcatgatcttatcacatttactcttaaagtttaggaaataaattctatcagtactcatct 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624  gcatgatcttatcacatttactcttaaagtttaggaaataaattctatcagtactcatct 565

                                                                        
Query: 650  tttcaatgagatgttgacattccgatttaatcggtaattctatacagaataatccgggtg 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564  tttcaatgagatgttgacattccgatttaatcggtaattctatacagaataatccgggtg 505

                                                                        
Query: 710  aacgtaaagaa-tagtcgagttttcaagtagaacagatccttggccaaaaacctccaaaa 768
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504  aacgtaaagaattagtcgagttttcaagtagaacagatccttggccaaaaacctccaaaa 445

                                                                        
Query: 769  tttttggaataccagctttttgcaaattccattgattttctcgaattttttctttcacgc 828
            | ||||||||| |||||| |||||||| |||||||| ||||||||| |||||||   |||
Sbjct: 444  tctttggaatagcagcttcttgcaaatcccattgatattctcgaatcttttcttcaccgc 385

                                                                        
Query: 829  cgaattttttcttacggtatttcaagtgttccttcacagcaaatttggacaatttccaaa 888
            || || | | ||||||| |||||||   ||||| ||||||||| | |||| | | | |||
Sbjct: 384  cgcatatgtccttacggaatttcaatgcttcctccacagcaaaataggacgagtacgaaa 325

                                         
Query: 889  cggggccgtttaagccatatttgttaaca 917
            ||| |||| | ||| || |||||||||||
Sbjct: 324  cggtgccgataaaggcaaatttgttaaca 296


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9607
Number of Sequences: 1807
Number of extensions: 9607
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)