BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZF04RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1463 973 0.0
>3x_Contig1463
Length = 9363
Score = 973 bits (491), Expect = 0.0
Identities = 552/571 (96%), Gaps = 1/571 (0%)
Strand = Plus / Plus
Query: 53 ctgcctcgaaaaa-gagatgcttgatcgtgtttatcctcaagctgctgcttacccttaca 111
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2176 ctgcctcgaaaaaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttaca 2235
Query: 112 ccggtgcattgctgcaaccaaatcctgtactatctggccatccactgggtcatcatcccc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2236 ccggtgcattgctgcaaccaaatcctgtactatctggccatccactgggtcatcatcccc 2295
Query: 172 atcctatcggttccccattccctggttacggttttaatacagctttcttttctgatccgg 231
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct: 2296 atcctatcggttccccattccctggttacggttttaatacagctttctctcctgtcccgg 2355
Query: 232 gccctactaacacgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaa 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2356 gccctactaacacgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaa 2415
Query: 292 acagcagcggcgatccaagtggccaatctaaccgtcatgtacactctggaactaattccc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2416 acagcagcggcgatccaagtggccaatctaaccgtcatgtacactctggaactaattccc 2475
Query: 352 caggattgagtcaacctggtagtctgccaatgtcaggacctaacccgtggatgtttgctg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2476 caggattgagtcaacctggtagtctgccaatgtcaggacctaacccgtggatgtttgctg 2535
Query: 412 ctcctcacggtagtcctaacttcctggttccacaccctcatcatccgggtcacgcaggcc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2536 ctcctcacggtagtcctaacttcctggttccacaccctcatcatccgggtcacgcaggcc 2595
Query: 472 ctccagctggccatcaaataccacagagcattaaccctcaacatagaaaacgtcattaca 531
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 2596 ctccagctggccatcaaagaccacagagcaataaccctcaacatagaaaacgtcatttca 2655
Query: 532 ataacattggttctagtcgtcacaatttcggaattatgaaacctcatggtaaaccttaac 591
|||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |||
Sbjct: 2656 ataacaatggttctagtcgtagcaatttcggaaatatgaaacctcatggtaaacctcaac 2715
Query: 592 tgtttgaagatggttattgttatcaagatgc 622
||||||||||||| | |||||||||||||
Sbjct: 2716 gctttgaagatggttctcgttatcaagatgc 2746
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6978
Number of Sequences: 1807
Number of extensions: 6978
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)