BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZF05FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig173 1516 0.0
>3x_Contig173
Length = 1358
Score = 1516 bits (765), Expect = 0.0
Identities = 801/809 (99%), Gaps = 3/809 (0%)
Strand = Plus / Plus
Query: 87 tacttaaaactgtttatctcatcatctggaggtttaaaaccaaatttttataataaaagc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacttaaaactgtttatctcatcatctggaggtttaaaaccaaatttttataataaaagc 504
Query: 147 atatcagtcacgtgctcttgcttcaccaaactgattcgaaaaaagattatatggaccccc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atatcagtcacgtgctcttgcttcaccaaactgattcgaaaaaagattatatggaccccc 564
Query: 207 cggtaagttttataggtgagaaaacctgttacatagtttttcagtcccctgacgtttatc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cggtaagttttataggtgagaaaacctgttacatagtttttcagtcccctgacgtttatc 624
Query: 267 ggctcttattccacttgttgcttacggctttagtactccagattagatatatctcagcat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggctcttattccacttgttgcttacggctttagtactccagattagatatatctcagcat 684
Query: 327 ttaaagaatactcatgatatagaatcctgtgagctaacaccccccatttcatcatcatta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttaaagaatactcatgatatagaatcctgtgagctaacaccccccatttcatcatcatta 744
Query: 387 aatcgacattgtccctttatttctttccaaagtcttaaggttacaatctgataattttat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aatcgacattgtccctttatttctttccaaagtcttaaggttacaatctgataattttat 804
Query: 447 taataatgccgccatgcaagttgatatgtgctacatcaggagtttcacaccaattatcta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taataatgccgccatgcaagttgatatgtgctacatcaggagtttcacaccaattatcta 864
Query: 507 atgtttatttccctagtttcttagatttgaaacagtttgcaagtgatactttccagatac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 atgtttatttccctagtttcttagatttgaaacagtttgcaagtgatactttccagatac 924
Query: 567 cgctcgatgacatacttctattgttaccttatggaatgatattgaagaaagcaggatggg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 cgctcgatgacatacttctattgttaccttatggaatgatattgaagaaagcaggatggg 984
Query: 627 attccagaaagctgcaacaagaaggattggaagaaatatacgtatttgaccgtggaatat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 attccagaaagctgcaacaagaaggattggaagaaatatacgtatttgaccgtggaatat 1044
Query: 687 tcaatgaggagatcgagttttccccaaagccaaggttccaacttttcaaacctttgccat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 tcaatgaggagatcgagttttccccaaagccaaggttccaacttttcaaacctttgccat 1104
Query: 747 cgccgataagcgattcgttacagttggataaaaatgtcattctacgggaatttagggtgg 806
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 1105 cgccgataagcgattcgttacagttggataaaaatgtcattctac-ggaatttagggt-g 1162
Query: 807 gttgaaagctttgcaatcagacgttgaatttttccaggacgttattaaagaaacttatca 866
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1163 gttgaaggctttgcaatcagacgttgaatttttccaggacgttataaaagaaacttatca 1222
Query: 867 agacgtttcacggtttattaaagtgtggt 895
||||||| |||| |||||| ||||||||
Sbjct: 1223 agacgttcaacgg-ttattagagtgtggt 1250
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7400
Number of Sequences: 1807
Number of extensions: 7400
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)