BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZF05RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1612 1431 0.0
>3x_Contig1612
Length = 15608
Score = 1431 bits (722), Expect = 0.0
Identities = 814/838 (97%), Gaps = 5/838 (0%)
Strand = Plus / Plus
Query: 47 tggacaagagagttgctgaactattgggattctctactgtctacccagttaccggtcaaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13726 tggacaagagagttgctgaactattgggattctctactgtctacccagttaccggtcaaa 13785
Query: 107 cttattctagaaagattgatatcgacgtgttggctccattatcctcatttgcagctactg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13786 cttattctagaaagattgatatcgacgtgttggctccattatcctcatttgcagctactg 13845
Query: 167 ctcacaagatggcgactgatatcagattattggctaacttgaaggaattggaagaaccgt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13846 ctcacaagatggcgactgatatcagattattggctaacttgaaggaattggaagaaccgt 13905
Query: 227 tcgaaaaatctcaaattggttcctctgccatggcttacaagagaaacccaatgcgttgcg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13906 tcgaaaaatctcaaattggttcctctgccatggcttacaagagaaacccaatgcgttgcg 13965
Query: 287 aacgtgtgtgttctcttgccagacatttgggttctttgttcaacgatgccgtacaaaccg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13966 aacgtgtgtgttctcttgccagacatttgggttctttgttcaacgatgccgtacaaaccg 14025
Query: 347 cgtcagtgcaatggtttgaaagaactttggatgactctgccatcagaagaatctctttgc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14026 cgtcagtgcaatggtttgaaagaactttggatgactctgccatcagaagaatctctttgc 14085
Query: 407 caagtgctttcttgaccgcagacattctactatccactttgctaaacatctcttccggtt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14086 caagtgctttcttgaccgcagacattctactatccactttgctaaacatctcttccggtt 14145
Query: 467 tagtcgtttatccaaaggtcatcgaaagaagaattatgggtgaattgccattcatggcca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14146 tagtcgtttatccaaaggtcatcgaaagaagaattatgggtgaattgccattcatggcca 14205
Query: 527 ctgaaaatattatcatggccatggtcgagcacggtgcatccagacaagaagttcatgaag 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14206 ctgaaaatattatcatggccatggtcgagcacggtgcatccagacaagaagttcatgaag 14265
Query: 587 ctatcagagtgctatctcaccaagctgccgctgtcgtcaaggaacaaggtggtgacaacg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14266 ctatcagagtgctatctcaccaagctgccgctgtcgtcaaggaacaaggtggtgacaacg 14325
Query: 647 acttgatcgaacgtgtgagacaggacaagttcttcgaacctatctggaatgaattggact 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14326 acttgatcgaacgtgtgagacaggacaagttcttcgaacctatctggaatgaattggact 14385
Query: 707 cattgttggagccatccacctttgtcggtagagctcctc-acaagttgagaatttc-ttg 764
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||
Sbjct: 14386 cattgttggagccatccacctttgtcggtagagctcctcaacaagttgagaagttcgttg 14445
Query: 765 ccaaccatttcaaac-agcgttggctgctttccaaaa-gatattcccgatggtgaa-ttt 821
||||| || |||||| ||||||||||||||||||||| ||||| | |||| ||| ||
Sbjct: 14446 ccaacgatgtcaaacaagcgttggctgctttccaaaatgatatcactgatgtcgaagtta 14505
Query: 822 agctaaaccgtttagcccccattccctttttttatccgctacggtgcttggaaaatat 879
|||||||| || |||| ||| | |||||| || ||||||||||||| |||||||||
Sbjct: 14506 agctaaacgtttaagccgccaataccttttatttaccgctacggtgctaggaaaatat 14563
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6289
Number of Sequences: 1807
Number of extensions: 6289
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)