BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZF06FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1402 0.0
>3x_Contig1762
Length = 22098
Score = 1402 bits (707), Expect = 0.0
Identities = 744/751 (99%), Gaps = 4/751 (0%)
Strand = Plus / Minus
Query: 87 gcacttacatgcagtgtattcgtcatctccgaattggtatcctccgcggtccaatttgtt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7345 gcacttacatgcagtgtattcgtcatctccgaattggtatcctccgcggtccaatttgtt 7286
Query: 147 gatgttgctctcctgttgtatgcagatcttttcctcaagttattatttaaattattgttg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7285 gatgttgctctcctgttgtatgcagatcttttcctcaagttattatttaaattattgttg 7226
Query: 207 ttgaaaccataaggtatatcagaagtcttacgacgttgtatggcattagaaagggaagcg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7225 ttgaaaccataaggtatatcagaagtcttacgacgttgtatggcattagaaagggaagcg 7166
Query: 267 cttgacccaggagtattgggagcaaggttgccgtaacttttctttctcacagagtttgat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7165 cttgacccaggagtattgggagcaaggttgccgtaacttttctttctcacagagtttgat 7106
Query: 327 gaatctaaactcaaagtcggagattttaacgtcaccgaatctgaactgtcttgtaatagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7105 gaatctaaactcaaagtcggagattttaacgtcaccgaatctgaactgtcttgtaatagt 7046
Query: 387 tgtatactatagaaaaataactgttcagtggttcgttgatagaaaagtgccactccaaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7045 tgtatactatagaaaaataactgttcagtggttcgttgatagaaaagtgccactccaaaa 6986
Query: 447 gaatctgcttttgggaagtatatgagctcaatatcatttaaatccgttggtgatgcagtg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6985 gaatctgcttttgggaagtatatgagctcaatatcatttaaatccgttggtgatgcagtg 6926
Query: 507 gatgggaattgaatggacccaaatggtgacatcggatgagtgatgcaaataaatctatag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6925 gatgggaattgaatggacccaaatggtgacatcggatgagtgatgcaaataaatctatag 6866
Query: 567 ttctcaaaattcgcattatagtccaaggtatcaggctgcattaccctctgcaatataagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865 ttctcaaaattcgcattatagtccaaggtatcaggctgcattaccctctgcaatataagt 6806
Query: 627 ccatttttgaagatacatgctttagatgtgtggaaaggtaatgaaaccacaaacgaatcg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6805 ccatttttgaagatacatgctttagatgtgtggaaaggtaatgaaaccacaaacgaatcg 6746
Query: 687 ttgtcgctaagatagtggaaatgtacagcgtctttcaatacaatgcataaagttaaaccc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745 ttgtcgctaagatagtggaaatgtacagcgtctttcaatacaatgcataaagttaaaccc 6686
Query: 747 aagtcatcccatcgtttgaaaccagaaaatatcaccggnattgttcaaaattgtaccttc 806
|||||||||||||||||||||||||||||||||||||| | || || |||||||||||||
Sbjct: 6685 aagtcatcccatcgtttgaaaccagaaaatatcaccgg-agtg-tcgaaattgtaccttc 6628
Query: 807 ttagggcattgatccctcagaccaccattct 837
|| |||| ||||||||||||||||||||||
Sbjct: 6627 -taaggca-tgatccctcagaccaccattct 6599
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6506
Number of Sequences: 1807
Number of extensions: 6506
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)