BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZF07FM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1152 0.0
>3x_Contig1778
Length = 27694
Score = 1152 bits (581), Expect = 0.0
Identities = 666/684 (97%), Gaps = 9/684 (1%)
Strand = Plus / Minus
Query: 87 cggcagttcttggtccctcgaaaagaattggttcagtttcttcaccggctggccacaagt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12560 cggcagttcttggtccctcgaaaagaattggttcagtttcttcaccggctggccacaagt 12501
Query: 147 ataagactgggaaacctgggatttcgacagattgaacgtcattggcagtagcatcgatct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12500 ataagactgggaaacctgggatttcgacagattgaacgtcattggcagtagcatcgatct 12441
Query: 207 tggcaatcaagaccttatctttcaattcgtcattttcatgagcaaattcagccatgcttt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12440 tggcaatcaagaccttatctttcaattcgtcattttcatgagcaaattcagccatgcttt 12381
Query: 267 cataagttggtgccaacttcttacaatgaccacaccatggagcgtagtactcaactaaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12380 cataagttggtgccaacttcttacaatgaccacaccatggagcgtagtactcaactaaaa 12321
Query: 327 catccttctttggatcacggacaatttcttcatggtttttaccaacaatcttaaagacag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12320 catccttctttggatcacggacaatttcttcatggtttttaccaacaatcttaaagacag 12261
Query: 387 agttttcttggatttctggaatttcttcacttttaacaataggttccgccttaccttcca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12260 agttttcttggatttctggaatttcttcacttttaacaataggttccgccttaccttcca 12201
Query: 447 agaaatcttcaacaaacttggtgatttcttcagtggctaaagtgattggtttttccaaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12200 agaaatcttcaacaaacttggtgatttcttcagtggctaaagtgattggtttttccaaag 12141
Query: 507 ccgcgaattcttcatcagccaattgtggcaaaccgtacttcaagtccttaatggtgtcat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12140 ccgcgaattcttcatcagccaattgtggcaaaccgtacttcaagtccttaatggtgtcat 12081
Query: 567 ggatggcaaacaatgggaattgctgcttttggttcaagttctcggcgtgtctaccgaatt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12080 ggatggcaaacaatgggaattgctgcttttggttcaagttctcggcgtgtctaccgaatt 12021
Query: 627 tgggagcattcaaaaccagcaaggt-gaccttacctctgaattttcttagccaagtcaac 685
||| ||||| |||| ||||||| || |||||||||||||||||| |||||||||||||||
Sbjct: 12020 tggaagcatccaaa-ccagcaaagttgaccttacctctgaattt-cttagccaagtcaac 11963
Query: 686 aaagtgagattccgaattcttcacgtttcttctgggggaagtgttaaaaaaagtattccc 745
|||||||||||| | |||||||||||| ||||||||| |||||| | || |||||| ||
Sbjct: 11962 aaagtgagattc-gtattcttcacgtt-cttctgggg-aagtgt-agaagaagtatgcca 11907
Query: 746 aaagggccccttgacagccatata 769
|| ||| ||||||||||||||||
Sbjct: 11906 aa--ggcaccttgacagccatata 11885
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7500
Number of Sequences: 1807
Number of extensions: 7500
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)