BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC23ZF07RM1.SCF screened BAC_end
         (1084 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1453                                                         591   e-168

>3x_Contig1453 
          Length = 8444

 Score =  591 bits (298), Expect = e-168
 Identities = 370/390 (94%), Gaps = 3/390 (0%)
 Strand = Plus / Minus

                                                                        
Query: 64   tctcaatgattgcgtaaattgtttgggt-catccaaaattcataacc-taatattgacgg 121
            |||||||||||| ||||||||||||  | ||||||||||||||     ||||||||||||
Sbjct: 2522 tctcaatgattgtgtaaattgtttgttttcatccaaaattcatgttgataatattgacgg 2463

                                                                        
Query: 122  ccaaaatagtaatcatgaaaataattctgaaaaactatcaacgaaaggtgtcagcgaacg 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2462 ccaaaatagtaatcatgaaaataattctgaaaaactatcaacgaaaggtgtcagcgaacg 2403

                                                                        
Query: 182  ataagaataagtcacgtgcgcaagttttacaattgtaatctatttagacgtttttttgta 241
            |||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||
Sbjct: 2402 ataagaataagtcacgtgcgcaagttttacaattgtaatctatttagacgtgagtatgta 2343

                                                                        
Query: 242  ttgtcgttagatgatatttcgaggtaggatgttcttcaaggtaaattcttcagacaccgg 301
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2342 ttgtcgttagatgagatttcgaggtaggatgttcttcaaggtaaattcttcagacaccgg 2283

                                                                        
Query: 302  ttcatccaatatggcaaggtctttgtctgggaagattttggggaaaaacaatgataaaat 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2282 ttcatccaatatggcaaggtctttgtctgggaagattttggggaaaaacaatgataaaat 2223

                                                                        
Query: 362  gacggtgagtaacagcacgataggaaaaccaatcgcaccttatggtgtttgttattgcga 421
            |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 2222 gacggtgagtaacaacacgataggaaaaccaatcgcacctt-ttgtgtttgttattgcga 2164

                                          
Query: 422  attcaacagcgaatccgactaaactgagtg 451
            ||||| || ||||||| |||||||||||||
Sbjct: 2163 attcagcaacgaatccaactaaactgagtg 2134


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7823
Number of Sequences: 1807
Number of extensions: 7823
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 1084
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1068
effective length of database: 10,329,639
effective search space: 11032054452
effective search space used: 11032054452
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)