BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZF08FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1356 0.0
>3x_Contig1775
Length = 26320
Score = 1356 bits (684), Expect = 0.0
Identities = 772/792 (97%), Gaps = 7/792 (0%)
Strand = Plus / Plus
Query: 88 tcataccatttcgtttccgtctccttcttttgatgtccttcatcgcgggccactattctg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23941 tcataccatttcgtttccgtctccttcttttgatgtccttcatcgcgggccactattctg 24000
Query: 148 gaagatctctttcttctgaccattagagcttgcatagactgttgtttcaatctgttagca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24001 gaagatctctttcttctgaccattagagcttgcatagactgttgtttcaatctgttagca 24060
Query: 208 tacaatttacgtccgtaaacctctgcctctgcatggtattctattaagccttggaaaaat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24061 tacaatttacgtccgtaaacctctgcctctgcatggtattctattaagccttggaaaaat 24120
Query: 268 tcttgaaaatcaatatcatctatcgtttgtagatattcgacgaagcttctataatcatgt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24121 tcttgaaaatcaatatcatctatcgtttgtagatattcgacgaagcttctataatcatgt 24180
Query: 328 gctaacgtttcataatcgatcttgacatcatttaaataggcgtcgatctcatcggaataa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24181 gctaacgtttcataatcgatcttgacatcatttaaataggcgtcgatctcatcggaataa 24240
Query: 388 tccaaatgaattacgtctatagtggcttctgtctcttcgacaagaacacaattctgtaac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24241 tccaaatgaattacgtctatagtggcttctgtctcttcgacaagaacacaattctgtaac 24300
Query: 448 tttataggtatgttcaatccgtttgattctggtttgaccgatacctgtttccttataatc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24301 tttataggtatgttcaatccgtttgattctggtttgaccgatacctgtttccttataatc 24360
Query: 508 tttccagtgggtaagaccaccaaagaggtagcatcattctcccaaatctcagggaattgg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24361 tttccagtgggtaagaccaccaaagaggtagcatcattctcccaaatctcagggaattgg 24420
Query: 568 aagctatccaaatggttttgtaaatagttcctaaaaccaatgttctttctttctaccaat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24421 aagctatccaaatggttttgtaaatagttcctaaaaccaatgttctttctttctaccaat 24480
Query: 628 ttaatgacatgaaaaatgatctcgaactgtt-ttatatgttgagatccgcgaat-tgcta 685
||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct: 24481 ttaatgacatggaaaatgatctcgaactgttgtaatatgttgagatccgcgaatctgcta 24540
Query: 686 ttgatatcctctgtgtaccaaagtagagatttgtttaatttcgaatt-aaaatgtgggac 744
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct: 24541 ttgatatcctctgtgtaccaaagtagagatttgtttaattccgaattaaaaatgtggtac 24600
Query: 745 ttcactatttcattccaatgtttcaaggataccgccttatcctggtcttaaagactgaat 804
||||||||||||| |||||||||||||||||||| ||||||||| || ||||||| ||
Sbjct: 24601 ttcactatttcatcccaatgtttcaaggataccgtcttatcctgttc-taaagacctgat 24659
Query: 805 caccctcaacaagatactcttgaattaaattcagtatatgaacctttttcgtncctgatc 864
|| ||||||||||||||||||||| ||||||||||||||| ||| | ||||| |||||||
Sbjct: 24660 caacctcaacaagatactcttgaa-taaattcagtatatg-accctcttcgt-cctgatc 24716
Query: 865 cgtgctgccccc 876
||||||||||||
Sbjct: 24717 cgtgctgccccc 24728
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6879
Number of Sequences: 1807
Number of extensions: 6879
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)