BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZF11FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1449 1536 0.0
>3x_Contig1449
Length = 7865
Score = 1536 bits (775), Expect = 0.0
Identities = 835/852 (98%), Gaps = 3/852 (0%)
Strand = Plus / Minus
Query: 88 ctcatgcttcattgagaacagatgactctactgtgccagcagctgcaacttcaagctcga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6735 ctcatgcttcattgagaacagatgactctactgtgccagcagctgcaacttcaagctcga 6676
Query: 148 agcaaaccgctcctgtgctaacaccagctccagttccatctggttcaaacccatggggta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6675 agcaaaccgctcctgtgctaacaccagctccagttccatctggttcaaacccatggggta 6616
Query: 208 tatctcaagcacccacaccagtttctactattttcaacaagacttctacttctaccactt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6615 tatctcaagcacccacaccagtttctactattttcaacaagacttctacttctaccactt 6556
Query: 268 tccctacgttgtcaagctccttgggggaaactctgaacagtccaggtccaggcactccta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6555 tccctacgttgtcaagctccttgggggaaactctgaacagtccaggtccaggcactccta 6496
Query: 328 cgaccactggatctgccccaacagcaaactcttcttctaacgtaagttcgaagaagaagg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6495 cgaccactggatctgccccaacagcaaactcttcttctaacgtaagttcgaagaagaagg 6436
Query: 388 gcgaaaagacatacgaggatccttacgatccaatggcaacatgtgttaagttcctagatc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6435 gcgaaaagacatacgaggatccttacgatccaatggcaacatgtgttaagttcctagatc 6376
Query: 448 aaacttttaagtttttatcagatattcctgaaagaagctacacattcaactccaacttat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6375 aaacttttaagtttttatcagatattcctgaaagaagctacacattcaactccaacttat 6316
Query: 508 tggatgacgaaacatatcaaagttacccatcacttttttcatttgagaagattggatgta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6315 tggatgacgaaacatatcaaagttacccatcacttttttcatttgagaagattggatgta 6256
Query: 568 gtgagcaatctgaaggtgtcttgggtgccaaactatgtgatttgcttactataaaacctg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6255 gtgagcaatctgaaggtgtcttgggtgccaaactatgtgatttgcttactataaaacctg 6196
Query: 628 tggaccacatgtcctctcttctgccattcattcaaaacaaggctacacctaccatgttac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6195 tggaccacatgtcctctcttctgccattcattcaaaacaaggctacacctaccatgttac 6136
Query: 688 canccggnaattgctgtccagcaaccacaattagtacaacagcagaagcagcagctacag 747
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6135 ca-ccgggaattgctgtccagcaaccacaattagtacaacagcagaagcagcagctacag 6077
Query: 748 caacagcaattacagcaacagcaacaacagctttcactgcaaatgcaactaccagcccaa 807
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6076 caacagcaattacagcaacagcaacaacagctttcactgcaaatgcaactacaagcccaa 6017
Query: 808 cagggcatggcgcagcaaggcatggcgcagcaagttatgagccagccacaaaagcattnt 867
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 6016 caaggcatggcgcagcaaggcatggcgcagcaagttatgagccagccac-aaagcaattc 5958
Query: 868 ttccgatctactaaatc-attaattccacgtnagaaacagactgctgccggattattagt 926
||||||||||||||||| |||||||| || |||||||||||||||||| || || |||
Sbjct: 5957 ttccgatctactaaatcaattaattcacggtaagaaacagactgctgccgtataatcagt 5898
Query: 927 actcagtttgat 938
||||||| ||||
Sbjct: 5897 actcagtatgat 5886
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6162
Number of Sequences: 1807
Number of extensions: 6162
Number of successful extensions: 163
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)