BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZF11RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1414 1152 0.0
>3x_Contig1414
Length = 7923
Score = 1152 bits (581), Expect = 0.0
Identities = 701/733 (95%), Gaps = 6/733 (0%)
Strand = Plus / Plus
Query: 79 cttgagagatt-agagaaatctactggcatgtatggctggttcttgaaggatccagaaac 137
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 cttgagagattcagagaaatctactggcatgtatggctggttcttgaaggatccagaaac 1613
Query: 138 tcatagctacacgctagaaccagaactgttagaatatctggcacaatatattaaagaaaa 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 tcatagctacacgctagaaccagaactgttagaatatctggcacaatatattaaagaaaa 1673
Query: 198 cggtccctttgatggaattggtggattcagtcaaggtgctggactagcagggtatctatc 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1674 cggtccctttgatggaattggtggattcagtcaaggtgctggactagcagggtatctatc 1733
Query: 258 cactgatttatggtccattctgccgctaaacaaggaggaacaaccgcctttcaaattcgc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1734 cactgatttatggtccattctgccgctaaacaaggaggaacaaccgcctttcaaattcgc 1793
Query: 318 tatgtacttctccggtttcaaattcgaaccagaacagttccaagctccgtacgagacaca 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1794 tatgtacttctccggtttcaaattcgaaccagaacagttccaagctccgtacgagacaca 1853
Query: 378 tccaatccaattaaaaactctacatattgtgggggaactagattccctcgttactgaaga 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1854 tccaatccaattaaaaactctacatattgtgggggaactagattccctcgttactgaaga 1913
Query: 438 aaggtcaatgaagttgttcgaagcgtgtgatccttcaacacgcactatggtaaagcattc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1914 aaggtcaatgaagttgttcgaagcgtgtgatccttcaacacgcactatggtaaagcattc 1973
Query: 498 cggtggtcactacattcctaatactaaaccgtttatcaatatgattttgagttggctgca 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1974 cggtggtcactacattcctaatactaaaccgtttatcaatatgattttgagttggctgca 2033
Query: 558 tgcacaagcagatgaaaatttaaaggaactttcgggttctgaag-atctgctattaaaaa 616
||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||
Sbjct: 2034 tgcacaagcagatgaaaatttaagggaactttcgggttctgaagaatctgctatgaaaaa 2093
Query: 617 ca-cgttaacaacttcgatccacatttggacgatgatttattagatatgattgactcttt 675
|| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2094 caccgttaacaactccgatccacaattggacgatgatttattagatatgattgactcttt 2153
Query: 676 tggtaagatctaagcccaa-tctttgccttg-gtattcttcactccttatttggttaatt 733
||||||||||| |||||| ||||||||||| ||||||||||| | ||||| ||||| |
Sbjct: 2154 cggtaagatctaggcccaattctttgccttgtatattcttcactacatattttgttaaat 2213
Query: 734 aagagtataaggaaaa-gtttttataactgaagctggcttcttatttttggaaaaggaat 792
|||| |||| ||||| ||| | ||||| |||| ||| || || |||| | |||||||
Sbjct: 2214 aagaagataaagaaaatgttctagtaactagagctagctcctaatatttgaagaaggaat 2273
Query: 793 tttacctaacttt 805
||||||||||||
Sbjct: 2274 attacctaacttt 2286
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7003
Number of Sequences: 1807
Number of extensions: 7003
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)