BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZF12FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1729 1471 0.0
3x_Contig1802 321 1e-87
>3x_Contig1729
Length = 15481
Score = 1471 bits (742), Expect = 0.0
Identities = 805/821 (98%), Gaps = 4/821 (0%)
Strand = Plus / Minus
Query: 89 tttgatgactaccgttcattccatcactgctactcaaaagactgttgatggtccatccca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13997 tttgatgactaccgttcattccatcactgctactcaaaagactgttgatggtccatccca 13938
Query: 149 caaggactggagaggtggtagaactgcttccggtaacattatcccatcctctactggtgc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13937 caaggactggagaggtggtagaactgcttccggtaacattatcccatcctctactggtgc 13878
Query: 209 tgctaaggctgttttttaagtcttgccagaattgcaaggtaaattgaccggtatggcttt 268
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13877 tgctaaggctgtcggtaaagtcttgccagaattgcaaggtaaattgaccggtatggcttt 13818
Query: 269 cagagtcccaaccgtcgatgtttctgtcgttgatttgaccgtcaagttggctaaggaagc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13817 cagagtcccaaccgtcgatgtttctgtcgttgatttgaccgtcaagttggctaaggaagc 13758
Query: 329 cacttacgatgaaatcaaggccgctgttaagaaggcttctcaaggtaagctaaagaatgt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13757 cacttacgatgaaatcaaggccgctgttaagaaggcttctcaaggtaagctaaagaatgt 13698
Query: 389 tgttggttacactgaagactctgttgtttccagcgatttccttggtgacactcactccac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13697 tgttggttacactgaagactctgttgtttccagcgatttccttggtgacactcactccac 13638
Query: 449 catctttgacgcctctgctggtattcaattgtctccaaagttcgtcaaggttgttgcttg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13637 catctttgacgcctctgctggtattcaattgtctccaaagttcgtcaaggttgttgcttg 13578
Query: 509 gtacgataacgaatacggttactctgaaagagttgtcgatttggttgagcacgttgctta 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13577 gtacgataacgaatacggttactctgaaagagttgtcgatttggttgagcacgttgctta 13518
Query: 569 aattactcttttaagttaacgaacgcttttgatgagactaacgatatttcaagtgattcc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13517 aattactcttttaagttaacgaacgcttttgatgagactaacgatatttcaagtgattcc 13458
Query: 629 attttttacttctaagttnttatcacctttatcttaaccattctatgccagtctttgctt 688
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 13457 attttttacttctaagtttttatcacctttatcttaaccattctatgccagtctttgctt 13398
Query: 689 tatggactttgattcaaattatgaagggaagtttttacgccaaataaaaactactacaac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13397 tatggactttgattcaaattatgaagggaagtttttacgccaaataaaaactactacaac 13338
Query: 749 aaattattaaaaaaaatgacgaataatatgaagtgtctaacgactgccaaaa-tattcat 807
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 13337 aaattattaaaaaaaatgacgaataatatgaagtgtctaacgactgccaaaattattcat 13278
Query: 808 ttcttttttatacacataaccatttcacttcatttactggtttgaagtggttttattacg 867
| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 13277 tccttttttatacacataaccatttcacttcatttactggtttg-agtgg-tttattacg 13220
Query: 868 ttgcctaacatgnatcacttcacattcagttccatcttttt 908
| ||||| ||| ||||| |||| ||||||||||||||||
Sbjct: 13219 tcgcctacaatg-atcacctcaccatcagttccatcttttt 13180
>3x_Contig1802
Length = 45229
Score = 321 bits (162), Expect = 1e-87
Identities = 222/242 (91%)
Strand = Plus / Minus
Query: 108 tccatcactgctactcaaaagactgttgatggtccatcccacaaggactggagaggtggt 167
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 15124 tccatcaccgctacccaaaagactgttgatggtccatcccaaaaggactggagaggtggt 15065
Query: 168 agaactgcttccggtaacattatcccatcctctactggtgctgctaaggctgttttttaa 227
||||| |||||||||||||| || ||||||||||||||||||||||||||||| | |
Sbjct: 15064 agaaccgcttccggtaacatcattccatcctctactggtgctgctaaggctgtcggtaag 15005
Query: 228 gtcttgccagaattgcaaggtaaattgaccggtatggctttcagagtcccaaccgtcgat 287
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 15004 gtcttgccagaattgcaaggtaagttgaccggtatggctttcagagtcccaaccgtcgat 14945
Query: 288 gtttctgtcgttgatttgaccgtcaagttggctaaggaagccacttacgatgaaatcaag 347
|| || || ||||| ||||| ||||||||||| |||||||| || |||||||||||||||
Sbjct: 14944 gtctccgttgttgacttgactgtcaagttggccaaggaagctacctacgatgaaatcaag 14885
Query: 348 gc 349
||
Sbjct: 14884 gc 14883
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6500
Number of Sequences: 1807
Number of extensions: 6500
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)