BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZG03RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1637 1588 0.0
>3x_Contig1637
Length = 14855
Score = 1588 bits (801), Expect = 0.0
Identities = 854/869 (98%), Gaps = 3/869 (0%)
Strand = Plus / Minus
Query: 48 gatctcatcctgatcaatttttggaacgttactgttgcgtaaagttcttgtagcaaaatc 107
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2876 gatctcatcctgatcaatatttggaacgttactgttgtgtaaagttcttgtagcaaaatc 2817
Query: 108 aatcaaggattcgctatcgacacgctttggaccaaatgggaacttaataaaactaccact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2816 aatcaaggattcgctatcgacacgctttggaccaaatgggaacttaataaaactaccact 2757
Query: 168 cttgcggttaggtaagatcaatgcaaattccggggctctttctaaccnnatgnttctctt 227
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 2756 cttgcggttaggtaagatcaatgcaaattccggggctctttctaacctagagtttctctt 2697
Query: 228 ctgagtcaaagtatcgaaggacaactccctacaaatggcttcattctttgaagaatctgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2696 ctgagtcaaagtatcgaaggacaactccctacaaatggcttcattctttgaagaatctgt 2637
Query: 288 cggattcacacagttgaaatgtaccgtattgattcctatcgagtcagccttgttacttac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2636 cggattcacacagttgaaatgtaccgtattgattcctatcgagtcagccttgttacttac 2577
Query: 348 caacttccaaatccgttgaaaaagcgaacagtcttcacagtttttgaactgataagaaga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2576 caacttccaaatccgttgaaaaagcgaacagtcttcacagtttttgaactgataagaaga 2517
Query: 408 ttcgatatcttcaaaatcagaggttggccaaaatgagacaaagtatggttcagtttgagg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2516 ttcgatatcttcaaaatcagaggttggccaaaatgagacaaagtatggttcagtttgagg 2457
Query: 468 ttctgataaaatcttcaagagctcaccatcattcaacagtttactcttgctcgatagttt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2456 ttctgataaaatcttcaagagctcaccatcattcaacagtttactcttgctcgatagttt 2397
Query: 528 agtgatatccagattgtctgcatccagagcttcctttcttgcaaaatttagcaaagttgt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2396 agtgatatccagattgtctgcatccagagcttcctttcttgcaaaatttagcaaagttgt 2337
Query: 588 ttcagtccgttccaaacctctgggaaatgccttgataaagccttctggtccatataatct 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2336 ttcagtccgttccaaacctctgggaaatgccttgataaagccttctggtccatataatct 2277
Query: 648 gatggtagggtatgaattaataccctctttcatacataagtctcctgactcgatacaatc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2276 gatggtagggtatgaattaataccctctttcatacataagtctcctgactcgatacaatc 2217
Query: 708 cacttgatggagagatatgttgagctgcaaggattcatcgtnaaagccattgtacgtctt 767
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2216 cacttgatggagagatatgttgagctgcaaggattcatcgtaaaagccattgtacgtctt 2157
Query: 768 ttcccaaattggggctagctgctttacatgatggcaatatggactggaaaattcgatgat 827
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 2156 ttcccaaattggggctagctgcttacaatgatggcaatatggactgaaaaattcgatgat 2097
Query: 828 gtgtagattctttgctatggtctcgtcaaa-ttggcttcagtcaatggagacggt-attt 885
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 2096 gtgtagattctttgctatggtctcgtcaaagttggcttcagtcaatggagacggtaattt 2037
Query: 886 actttctggatccgca-cattaccttgat 913
|||||||||||||||| ||||||||||||
Sbjct: 2036 actttctggatccgcagcattaccttgat 2008
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6315
Number of Sequences: 1807
Number of extensions: 6315
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)