BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZG04RM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1267 0.0
>3x_Contig1610
Length = 13981
Score = 1267 bits (639), Expect = 0.0
Identities = 687/702 (97%), Gaps = 1/702 (0%)
Strand = Plus / Minus
Query: 50 ggtaagttacacatcaaagctctatttatcgaatcagtggtgacagacccagtcttacaa 109
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 8999 ggtaagttacacatcaaagttctatttatcgaatcagtggtgacagacccagtcttacaa 8940
Query: 110 aagaggaacgtcgatttggctataaaatccgaagactataaagggtgggtccttaagagg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8939 aagaggaacgtcgatttggctataaaatccgaagactataaagggtgggtccttaagagg 8880
Query: 170 gctgaagaagattatatggaaagactccaagccaataaatatttgtatcaagaaatgagc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8879 gctgaagaagattatatggaaagactccaagccaataaatatttgtatcaagaaatgagc 8820
Query: 230 ccagaagaaaagttgagctacgttaagtatatcaacttcggtgagaagttgaccgtgaac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8819 ccagaagaaaagttgagctacgttaagtatatcaacttcggtgagaagttgaccgtgaac 8760
Query: 290 aataataactatggctatttgattaacaagattgtcttcttcttaatgaaccttcgtgat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8759 aataataactatggctatttgattaacaagattgtcttcttcttaatgaaccttcgtgat 8700
Query: 350 aagagaggctgtgtctatttcgctcgttgtggaacaagtgttaaagataagtacatcgac 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8699 aagagaggctgtgtctatttcgctcgttgtggaacaagtgttaaagataagtacatcgac 8640
Query: 410 gatgaagagttaaacggagaaggcttggaatattccagaatattgacagaccttgtattg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8639 gatgaagagttaaacggagaaggcttggaatattccagaatattgacagaccttgtattg 8580
Query: 470 gacttggtcaacagaagaagacttaacgctaatgatgacggagcagacgttccaaggaca 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8579 gacttggtcaacagaagaagacttaacgctaatgatgacggagcagacgttccaaggaca 8520
Query: 530 ccgtctctggtctccctaaatgaaagatcaaaatcaccgntgattgctacgagtgcatca 589
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8519 ccgtctctggtctccctaaatgaaagatcaaaatcaccgttgattgctacgagtgcatca 8460
Query: 590 ttgaaacggactgaatcaactggtaacgctatgtataggcaacctgctagtggggatggt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8459 ttgaaacggactgaatcaactggtaacgctatgtataggcaacctgctagtggggatggt 8400
Query: 650 gttgatgacgacttctttgtggtgtggacggcacccaaggagagaacgttccatacggca 709
||||||||||||| ||| ||||||||||||||||| | | ||||||||| | ||||||||
Sbjct: 8399 gttgatgacgactccttcgtggtgtggacggcaccaaggaagagaacgtacgatacggca 8340
Query: 710 aaatactttggtgatcttgggcttactggtaaggcaaagaaa 751
|||||||||| |||||| || ||||| |||||||| |||||
Sbjct: 8339 aaatactttgctgatctgggcattact-gtaaggcagagaaa 8299
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7463
Number of Sequences: 1807
Number of extensions: 7463
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)