BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZG05RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1220 813 0.0
>3x_Contig1220
Length = 4729
Score = 813 bits (410), Expect = 0.0
Identities = 444/456 (97%)
Strand = Plus / Plus
Query: 57 cttggtggttcggnggtggttttgatttaactccttcttaaaagtacgaggaagacgcta 116
||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 4263 cttggtggttcggtggtggtgctgatttaactccttcttatttgtacgaggaagacgcta 4322
Query: 117 aattgttccatcaattgcacaaggatgctttggacaaaacggacgttgccttgtacccaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4323 aattgttccatcaattgcacaaggatgctttggacaaaacggacgttgccttgtacccaa 4382
Query: 177 aatacaagaaatggtgcgatgagtatttctatatcaaacacagagaagaaactttttgta 236
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4383 aatacaagaaatggtgcgatgagtatttctatatcaaacacagagaagaaaccagaggta 4442
Query: 237 tcggtggtattttctttgatgatgtcgatgatcgtgatccaaacgaaatcttgcaaatgg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4443 tcggtggtattttctttgatgatgtcgatgatcgtgatccaaacgaaatcttgcaaatgg 4502
Query: 297 ttgaaaactgttttgatgccttcttgccatcttacctcgaaatcatcaaaagaagaaagg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4503 ttgaaaactgttttgatgccttcttgccatcttacctcgaaatcatcaaaagaagaaagg 4562
Query: 357 atatgccttacactgaagaagaaagacaatggcaacaaattagacgtggcagatacgttg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4563 atatgccttacactgaagaagaaagacaatggcaacaaattagacgtggcagatacgttg 4622
Query: 417 aattcaacctagtccttgacagaggtactcaattcggtttaagaactccaggatcccgtg 476
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4623 aattcaacctagtccttgacagaggtactcaattcggnttaagaactccaggatcccgtg 4682
Query: 477 tcgaaagtattttgatgtctttgcctgtgactgctt 512
||||||||||||||||||||||||||||||||||||
Sbjct: 4683 tcgaaagtattttgatgtctttgcctgtgactgctt 4718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,057
Number of Sequences: 1807
Number of extensions: 14057
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)