BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZG06FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1484 1507 0.0
>3x_Contig1484
Length = 9345
Score = 1507 bits (760), Expect = 0.0
Identities = 798/809 (98%), Gaps = 2/809 (0%)
Strand = Plus / Minus
Query: 87 ttcccctacctgttctaaaagcacatacatcttttcatctgagaaaatacttcccaagtc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5363 ttcccctacctgttctaaaagcacatacatcttttcatctgagaaaatacttcccaagtc 5304
Query: 147 caaaatcaatgatgtagcttcagtgaccttactgtaacttatatcatctttcttcagtaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5303 caaaatcaatgatgtagcttcagtgaccttactgtaacttatatcatctttcttcagtaa 5244
Query: 207 aaattgaacagttgctagtgtcaagttgttaaacgatggttcaatttgtctgattctttt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5243 aaattgaacagttgctagtgtcaagttgttaaacgatggttcaatttgtctgattctttt 5184
Query: 267 ctgatagtctttttccagatgtaataaggcggttatcgaatcgaatgatggaccttgtaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5183 ctgatagtctttttccagatgtaataaggcggttatcgaatcgaatgatggaccttgtaa 5124
Query: 327 atagtaacctagggttcctaatgcattaatgtaatctcctttatgtatatggtgtaagac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5123 atagtaacctagggttcctaatgcattaatgtaatctcctttatgtatatggtgtaagac 5064
Query: 387 aatatcggaccatgagttaattttccccaccattaaactgtaattggtgagcacaacaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5063 aatatcggaccatgagttaattttccccaccattaaactgtaattggtgagcacaacaat 5004
Query: 447 cgtgttatttaacgtagcgaaatggttctcagattctggaaccatcagttcatgaataag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5003 cgtgttatttaacgtagcgaaatggttctcagattctggaaccatcagttcatgaataag 4944
Query: 507 taagtcaatactagtgagtacaggatcctcatcggtatcaacactacctatgtttaaaac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4943 taagtcaatactagtgagtacaggatcctcatcggtatcaacactacctatgtttaaaac 4884
Query: 567 gagaagcttacttgacaagagcaaaatagtcaaaatgttatttgtgagccaggcaacttt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4883 gagaagcttacttgacaagagcaaaatagtcaaaatgttatttgtgagccaggcaacttt 4824
Query: 627 acaaatgcattcaggagcttcgtacgtccattgtaaagtcggaaacctgatatcgacaag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823 acaaatgcattcaggagcttcgtacgtccattgtaaagtcggaaacctgatatcgacaag 4764
Query: 687 gctcaactggttatctacagagaaagcaacctgatttggattgacgtcattccaggagat 746
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4763 gctcaactggttatctacagagaaggcaacctgatttggattgacgtcattccaggagat 4704
Query: 747 atatccaaaagtggccgagtttttgtgtgacaattcaatgagccgataagttgaataagt 806
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4703 atatccaaaagtggccgagtttttgtgtgacaattcaatgagccgataagttgataaagt 4644
Query: 807 tggcgatgacaatgatatgactgcgcaaggatcnattagattaaactgctnacagatgnt 866
||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||| |
Sbjct: 4643 tggcgatgacaatgatatgactgcg-aaggatcgattagataaaactgctaacagatgtt 4585
Query: 867 cagcatcattatctttaccggttgcttcg 895
||||||||| ||||| ||| |||||||||
Sbjct: 4584 cagcatcataatcttcacc-gttgcttcg 4557
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5460
Number of Sequences: 1807
Number of extensions: 5460
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)