BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZG06RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1437 0.0
>3x_Contig1497
Length = 11582
Score = 1437 bits (725), Expect = 0.0
Identities = 800/820 (97%), Gaps = 4/820 (0%)
Strand = Plus / Minus
Query: 70 agtacgaacgtgctgaagaattgaagaaacaatacgaacaataccgtttggaaaaattgg 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10662 agtacgaacgtgctgaagaattgaagaaacaatacgaacaataccgtttggaaaaattgg 10603
Query: 130 ctaagttccaaggtgttaacttgttcatcaagaacttggacgattccatcgatgacgaaa 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10602 ctaagttccaaggtgttaacttgttcatcaagaacttggacgattccatcgatgacgaaa 10543
Query: 190 aattgaaggaagaattcgccccattctgttttcttcacctctgctagagtcatgagagac 249
|||||||||||||||||||||||| | || | ||||||||||||||||||||||||||
Sbjct: 10542 aattgaaggaagaattcgccccatacggtac-catcacctctgctagagtcatgagagac 10484
Query: 250 caagagggtaactctaagggtttcggtttcgtttgtttctcttctccagaagaagctacc 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10483 caagagggtaactctaagggtttcggtttcgtttgtttctcttctccagaagaagctacc 10424
Query: 310 aaggctatgaccgaaaagaaccaacaaattgttgccggtaagccattgtacgttgccatt 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10423 aaggctatgaccgaaaagaaccaacaaattgttgccggtaagccattgtacgttgccatt 10364
Query: 370 gctcaaagaaaggatgtcagaagatcccaattggctcaacaaattcaagccagaaaccaa 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10363 gctcaaagaaaggatgtcagaagatcccaattggctcaacaaattcaagccagaaaccaa 10304
Query: 430 atcagattccaacaacagcaacaacaacaagctgctgccgctgctgctggtatgccaggc 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10303 atcagattccaacaacagcaacaacaacaagctgctgccgctgctgctggtatgccaggc 10244
Query: 490 caatacatgccacaaatgttctatggtgttatggccccaagaggtttcccaggtccaaac 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10243 caatacatgccacaaatgttctatggtgttatggccccaagaggtttcccaggtccaaac 10184
Query: 550 ccaggtatgaacggcccaatgggtgccggtattccaaagaacggtatggtcccaccacca 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10183 ccaggtatgaacggcccaatgggtgccggtattccaaagaacggtatggtcccaccacca 10124
Query: 610 caacaatttgctggtagaccaaacggtccaatgtaccaaggtatgccacctncaaaccaa 669
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10123 caacaatttgctggtagaccaaacggtccaatgtaccaaggtatgccacctcaaaaccaa 10064
Query: 670 ttcccaagacaccaacaacaacactacatccaacaacaaaagcaaagaccagccttgggt 729
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 10063 ttcccaagacaccaacaacaacactacatccaacaacaaaagcaaagacaagccttgggt 10004
Query: 730 gaacaattgtacaagagggtcagtgcccagattgacgacgaaaacgccgctgttaggatc 789
|||||||||||||||| |||||||||| |||||||||||||||||||||||| || ||||
Sbjct: 10003 gaacaattgtacaagaaggtcagtgccaagattgacgacgaaaacgccgctggtaagatc 9944
Query: 790 accggtatgatcttggatctacca-cacagcaagtcatcccattgttggacaacgacaac 848
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct: 9943 accggtatgatcttggatctaccaccacagcaagtcatccaattgttggacaacgacgaa 9884
Query: 849 caatttgaacagcatttcc-agaagcccttagctgcttac 887
|||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 9883 caatttgaacagcaattccaagaag-ccttagctgcttac 9845
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8534
Number of Sequences: 1807
Number of extensions: 8534
Number of successful extensions: 382
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)