BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZG09RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1288 1136 0.0
>3x_Contig1288
Length = 8015
Score = 1136 bits (573), Expect = 0.0
Identities = 609/617 (98%), Gaps = 3/617 (0%)
Strand = Plus / Minus
Query: 53 ctttccagttcaaatctacataagggcttgggagcaggcgcactaacagttggcgtacca 112
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2262 ctttccagttcaaatctagataagggcttgggagcaggcgcactaacagttggcgtacca 2203
Query: 113 cctggtttgaagaaaccatatgatgaaagggttgactgacccttaggacgagaaagaagc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2202 cctggtttgaagaaaccatatgatgaaagggttgactgacccttaggacgagaaagaagc 2143
Query: 173 gatgaacctatatttgcctttttcaacattgaatcagcacgctggccagaagtcatggat 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2142 gatgaacctatatttgcctttttcaacattgaatcagcacgctggccagaagtcatggat 2083
Query: 233 ggtttattcggttgctgctgaacagtagagatggtagcttttgattcctgtaaggatcca 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2082 ggtttattcggttgctgctgaacagtagagatggtagcttttgattcctgtaaggatcca 2023
Query: 293 gaaggtttagtaccctttttcagtaatgctttttctaagtgatacttttcagattcttta 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2022 gaaggtttagtaccctttttcagtaatgctttttctaagtgatacttttcagattcttta 1963
Query: 353 acaacttcgtttgtcaaggctttgttgaagtaacgggatctttcaagaagctcttggctc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1962 acaacttcgtttgtcaaggctttgttgaagtaacgggatctttcaagaagctcttggctc 1903
Query: 413 tgagccgctgaaagtttgtttggatattttcgagcttttgaagcatatcttgccatatcc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1902 tgagccgctgaaagtttgtttggatattttcgagcttttgaagcatatcttgccatatcc 1843
Query: 473 aacactagcatttcatcaaatcgaaattgttttctccttcgcaagatcagaagctgatac 532
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1842 aacactagcatttcatcaaatcgaaattg-tttctccttcgcaagatcagaagctgatac 1784
Query: 533 tattaacatgacacaagaggcaagaagctgttcatcattcaacctcaaccagtaaagcat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 tattaacatgacacaagaggcaagaagctgttcatcattcaacctcaaccagtaaagcat 1724
Query: 593 atttttgaatgggctcattgggaatttgaaaagatc-tttttagttattttttcctttga 651
|||||||||||||||||||||||||||||||||||| | || ||||| | ||||| ||||
Sbjct: 1723 atttttgaatgggctcattgggaatttgaaaagatcatcttcagtta-tatttcccttga 1665
Query: 652 ctaaaacatcggagaac 668
|||||||||||||||||
Sbjct: 1664 ctaaaacatcggagaac 1648
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,451
Number of Sequences: 1807
Number of extensions: 14451
Number of successful extensions: 168
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)