BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZG10RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1314 0.0
>3x_Contig1775
Length = 26320
Score = 1314 bits (663), Expect = 0.0
Identities = 763/786 (97%), Gaps = 9/786 (1%)
Strand = Plus / Minus
Query: 45 ctttcaatttggaattggaaccgtcagctgtcgtgtataacagcgaacccattgaaacaa 104
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3963 ctttcaagttggaattggaaccaccagctgtcgtgtataacagcgaacccattgaaacaa 3904
Query: 105 cagcaatagaaacacagactagcaaatatggtgaacagcttgatgaggagagcaatcact 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3903 cagcaatagaaacacagactagcaaatatggtgaacagcttgatgaggagagcaatcact 3844
Query: 165 tagaaagaagcagcagtcagtcacctgtgaatgaaattgcagatgagctagaatatatga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 3843 tagaaagaagcagcagtcagtcacctgtgaatgaaattgcagatgagctagaagaaatga 3784
Query: 225 gcattgaagacgtcgatcacatgttgatgcgcgcagttaagtattctattaaatttgacg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3783 gcattgaagacgtcgatcacatgttgatgcgcgcagttaagtattctattaaatttgacg 3724
Query: 285 acaagatcacattgcctattgtcgcgtctaccttcatttctaaccatgtaatgaagaact 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3723 acaagatcacattgcctattgtcgcgtctaccttcatttctaaccatgtaatgaagaact 3664
Query: 345 tgcccgatgttgataccaatatggtgaatatcaagaagtcttcctggaagaaggcaacta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3663 tgcccgatgttgataccaatatggtgaatatcaagaagtcttcctggaagaaggcaacta 3604
Query: 405 aactccttaaatatttggaagacgaaggattcttgaagctaaagggcaagaatgacagtt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3603 aactccttaaatatttggaagacgaaggattcttgaagctaaagggcaagaatgacagtt 3544
Query: 465 gcaccgttatctcgctaaacaagaatcataaggatttaacaaacatggaagcctacaaga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3543 gcaccgttatctcgctaaacaagaatcataaggatttaacaaacatggaagcctacaaga 3484
Query: 525 ccttggcaactattgctaagaaatcctcaggtgatactacaaaccaatcaaataaaaaca 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3483 ccttggcaactattgctaagaaatcctcaggtgatactacaaaccaatcaaataaaaaca 3424
Query: 585 agataacagcatattctggtgaaaatctttatacaccaatgagcgcatgccaaagattca 644
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3423 agataacagcatattctggtgaaaatctttataaaccaatgagcgcatgccaaagattca 3364
Query: 645 ttacgcggaataaccgccgatgtcccacagagttactacactcaacaagagttaaaaaag 704
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3363 ttac-cggaataaccgccgatgtcccacagagttactacactcaacaagagttaaaaaag 3305
Query: 705 ctttctagatttgtatgtccggcaattaacattcttatagatccgggagaacaaatcttt 764
| ||||||||||||||||| || | ||||| ||| |||||||| ||||||||||||| |
Sbjct: 3304 c-ttctagatttgtatgtc--gccaataacaatctaatagatcc-ggagaacaaatctct 3249
Query: 765 tgtcaaaatatgaggatacgcttttaaaaaatgtctaacaagagctccccaaaattggtg 824
|||| |||||||| ||||||| |||| ||||||||||| |||||||||||||| |||||
Sbjct: 3248 tgtc-aaatatgatgatacgc-tttatcaaatgtctaac-agagctccccaaaa-tggtg 3193
Query: 825 gaatac 830
||||||
Sbjct: 3192 gaatac 3187
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7519
Number of Sequences: 1807
Number of extensions: 7519
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)