BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZG11FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1548 0.0
>3x_Contig1265
Length = 8324
Score = 1548 bits (781), Expect = 0.0
Identities = 801/805 (99%), Gaps = 2/805 (0%)
Strand = Plus / Plus
Query: 89 ccgggtgtctcttcaacaactctgtaattatcaacttgcacttcattcatatttttctaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4871 ccgggtgtctcttcaacaactctgtaattatcaacttgcacttcattcatatttttctaa 4930
Query: 149 gatcattggactcagtaggaagggtgtgacttcttaacaaggtgcctttttttgtcttgg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931 gatcattggactcagtaggaagggtgtgacttcttaacaaggtgcctttttttgtcttgg 4990
Query: 209 acaagttgctctacacatttcccaccaaagtagtcaatgtcctcagtttttgaatgaagg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4991 acaagttgctctacacatttcccaccaaagtagtcaatgtcctcagtttttgaatgaagg 5050
Query: 269 tatagcgttgttatgttagtaattgtgccatttaattcgaaacacgtcctagtgtgacct 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5051 tatagcgttgttatgttagtaattgtgccatttaattcgaaacacgtcctagtgtgacct 5110
Query: 329 aaaaccccagaaaacgagagaatacatactccggaattgagtcctgtgatagagccattg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5111 aaaaccccagaaaacgagagaatacatactccggaattgagtcctgtgatagagccattg 5170
Query: 389 ttgatgattgatgttccttgatctgttactgctttatactatgtggtttatgcaaagcat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5171 ttgatgattgatgttccttgatctgttactgctttatactatgtggtttatgcaaagcat 5230
Query: 449 gggacgccactggcaagtttgttcatcttgcgaaggtgtgcagtttattcatagaaatcg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5231 gggacgccactggcaagtttgttcatcttgcgaaggtgtgcagtttattcatagaaatcg 5290
Query: 509 ttttcatttcttcgaaagatgatattatagtaatgataataataatacgtaagtgtaaaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5291 ttttcatttcttcgaaagatgatattatagtaatgataataataatacgtaagtgtaaaa 5350
Query: 569 gagaaaaaaagaccaggtaaccaaatatatataaaaagggaacagagcaagcgcaacaca 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351 gagaaaaaaagaccaggtaaccaaatatatataaaaagggaacagagcaagcgcaacaca 5410
Query: 629 tacaattctgtatatgtttgtatatagtatgcactcttactcgtcaatcgaccattcttt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5411 tacaattctgtatatgtttgtatatagtatgcactcttactcgtcaatcgaccattcttt 5470
Query: 689 ggcagtgagacagtacttttctggaggcaaacgcacaccccaagatgacacaacgttggg 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5471 ggcagtgagacagtacttttctggaggcaaacgcacaccccaagatgacacaacgttggg 5530
Query: 749 caacggttttcttgtttctctttgccgcaagctgttacatgagttcctttggagcagtag 808
|||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 5531 caacgg-tttcttgtttctctctgccgcaagctgtaacatgagttcctttggagcagtag 5589
Query: 809 gcttgaattggtactgtgtgcgagctccgatcgctaaccgtatatcttctatcgaaacat 868
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5590 gcttgaattggtactgtgtgcgagctccgatcgctaaccgtatatcttctatcgaaaca- 5648
Query: 869 tccgaagcagaccctcctacgtact 893
|||||||||||||||||||||||||
Sbjct: 5649 tccgaagcagaccctcctacgtact 5673
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6993
Number of Sequences: 1807
Number of extensions: 6993
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)