BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZG12FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1016 1483 0.0
>3x_Contig1016
Length = 4444
Score = 1483 bits (748), Expect = 0.0
Identities = 795/808 (98%), Gaps = 2/808 (0%)
Strand = Plus / Plus
Query: 86 atcgttcgtattattcacgatttcggtcaattcaagttctcttgcaagcactctttcctt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2642 atcgttcgtattattcacgatttcggtcaattcaagttctcttgcaagcactctttcctt 2701
Query: 146 ctgtcgttgttccatttcgttataatctaattgggcttgtgagccgtacctgtcctgttc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2702 ctgtcgttgttccatttcgttataatctaattgggcttgtgagccgtacctgtcctgttc 2761
Query: 206 ctgcaataacgggtcattttcgtcgctatcttgacgaaagcagcaacttagcacatttcc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2762 ctgcaataacgggtcattttcgtcgctatcttgacgaaagcagcaacttagcacatttcc 2821
Query: 266 cataatattttaaatgttttaggcagattttcggtagctactgatgctagaattcgttag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2822 cataatattttaaatgttttaggcagattttcggtagctactgatgctagaattcgttag 2881
Query: 326 taaacgtaaactatctcattgccttggtggctttaaggtaaaggaactacacttactata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2882 taaacgtaaactatctcattgccttggtggctttaaggtaaaggaactacacttactata 2941
Query: 386 gatgttgataaaaagcactgggaagcataaatttcatattctagtatgtgggttgtgggt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2942 gatgttgataaaaagcactgggaagcataaatttcatattctagtatgtgggttgtgggt 3001
Query: 446 gttttgaatagggtaaccccgtcttctttatctatcgggctacatagataagcagctttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3002 gttttgaatagggtaaccccgtcttctttatctatcgggctacatagataagcagctttt 3061
Query: 506 agttactgaatacagtgaacatcatgcaaaccaggaagtacgcacttaactcgacccgtt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3062 agttactgaatacagtgaacatcatgcaaaccaggaagtacgcacttaactcgacccgtt 3121
Query: 566 gttaaagaccactatgatgcaactatctatcgcttcagatcctgtttctttctctcttta 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3122 gttaaagaccactatgatgcaactatctatcgcttcagatcctgtttctttctctcttta 3181
Query: 626 gaaccttcccatatggactacattctttctatgcccaattgaaaaattgaaaaatttcat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3182 gaaccttcccatatggactacattctttctatgcccaattgaaaaattgaaaaatttcat 3241
Query: 686 ctaaaaactataaacttacaatttgatgaagatattgtatattagaacattaattgaaac 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3242 ctaaaaactataaacttacaatttgatgaagatattgtatattagaacattaattgaacg 3301
Query: 746 gtcaagttcttgatgagcttaagcacagaagtatcttctagtgttgtctgaattggcggg 805
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3302 gtcaagttcttgatgagcttaagcacagaagtatcttctagtgttgtctgatttggcggt 3361
Query: 806 tgatattatttca-taaagcgtggtactgggcatatttttcaattcgaaacaaaaaaaaa 864
|||||| | |||| ||||||||||||||| |||||||||||||| |||||||||| ||
Sbjct: 3362 tgatatcagttcattaaagcgtggtactgtgcatatttttcaatcgaaaacaaaaaagaa 3421
Query: 865 t-atgatgctagcgtctaggtacgtgcc 891
| ||||||||||||||||||||||||||
Sbjct: 3422 taatgatgctagcgtctaggtacgtgcc 3449
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7663
Number of Sequences: 1807
Number of extensions: 7663
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)